Category Archives: Uncategorized

SciCodes poster at AGU24


The SciCodes Consortium (https://scicodes.net/) recognizes the need for editors and maintainers of research software registries and repositories to share knowledge of best practices and create standards. Our 37 members represent science organizations, institutions, and multidisciplinary research communities that span the institutions across disciplines including biological, medical, mathematical and physical sciences and engineering. These repositories play a pivotal role in strengthening research by enhancing the discoverability of software, thereby supporting transparency, reproducibility, and fostering efficiency through software reuse. Hence, through their stewardship of software, our members pursue common goals including the recognition of software as a first-class citizen in research and establishing metadata standards to enable searching across multiple software registries.

SciCodes grew from the Best Practices for Registries Task Force as part of the FORCE11 Software Citation Implementation Working Group. These best practices (Garijo et al., 2022) are:

  • Provide a public scope statement
  • Provide guidance for users
  • Provide guidance to software contributors
  • Establish an authorship policy
  • Share your metadata schema
  • Stipulate conditions of use
  • State a privacy policy
  • Provide a retention policy
  • Disclose your end-of-life policy

The group regularly self assesses for compliance. Examples of how these best practices are implemented in practice are linked to from our website.

We invite the community to join our monthly discussions to:

    • Discuss challenges and share solutions to common issues that arise in managing our resources
    • Strengthen resources through implementation of identified best practices
    • Keep up with and share advances through monthly presentations
    • Speed adoption of CodeMeta and CFF standards to improve software citation and discoverability

References
Garijo, D. et al., 2022. Nine best practices for research software registries and repositories. PeerJ Computer Science 8:e1023 https://doi.org/10.7717/peerj-cs.1023

Download (PDF; working links)

August additions to the ASCL

Twenty-five codes were added to the ASCL in August 2019:

actsnclass: Active learning for supernova photometric classification
Analysator: Quantitative analysis of Vlasiator files
BEAST: Bayesian Extinction And Stellar Tool
bias_emulator: Halo bias emulator
dips: Detrending periodic signals in timeseries

DustCharge: Charge distribution for a dust grain
EBAI: Eclipsing Binaries with Artificial Intelligence
FastCSWT: Fast directional Continuous Spherical Wavelet Transform
FIRST Classifier: Automated compact and extended radio sources classifier
GBKFIT: Galaxy kinematic modeling

Gramsci: GRAph Made Statistics for Cosmological Information
JPLephem: Jet Propulsion Lab ephemerides package
MAESTROeX: Low Mach number stellar hydrodynamics code
Molsoft: Molonglo Telescope Observing Software
MosfireDRP: MOSFIRE Data Reduction Pipeline

NuRadioMC: Monte Carlo simulation package for radio neutrino detectors
oscode: Oscillatory ordinary differential equation solver
PyRADS: Python RADiation model for planetary atmosphereS
PYSAT: Python Satellite Data Analysis Toolkit
QAC: Quick Array Combinations front end to CASA

QLF: Luminosity function analysis code
SNAPDRAGONS: Stellar Numbers And Parameters Determined Routinely And Generated Observing N-body Systems
TRISTAN-MP: TRIdimensional STANford – Massively Parallel code
Vlasiator: Hybrid-Vlasov simulation code
YMW16: Electron-density model

April and May 2016 additions to the ASCL

Twenty-eight codes were added to the ASCL in April and May 2016:

2-DUST: Dust radiative transfer code
ASTRiDE: Automated Streak Detection for Astronomical Images
BACCHUS: Brussels Automatic Stellar Parameter
CAMELOT: Cloud Archive for MEtadata, Library and Online Toolkit
CCSNMultivar: Core-Collapse Supernova Gravitational Waves

cluster-lensing: Tools for calculating properties and weak lensing profiles of galaxy clusters
DISCO: 3-D moving-mesh magnetohydrodynamics package
DNest3: Diffusive Nested Sampling
DUO: Spectra of diatomic molecules
FDPS: Framework for Developing Particle Simulators

grtrans: Polarized general relativistic radiative transfer via ray tracing
Halotools: Galaxy-Halo connection models
K2SC: K2 Systematics Correction
LAMBDAR: Lambda Adaptive Multi-Band Deblending Algorithm in R
libpolycomp: Compression/decompression library

magicaxis: Pretty scientific plotting with minor-tick and log minor-tick support
MARZ: Redshifting Program
MUSCLE: MUltiscale Spherical-ColLapse Evolution
OpenMHD: Godunov-type code for ideal/resistive magnetohydrodynamics (MHD)
PDT: Photometric DeTrending Algorithm Using Machine Learning

SAND: Automated VLBI imaging and analyzing pipeline
Shadowfax: Moving mesh hydrodynamical integration code
Surprise Calculator: Estimating relative entropy and Surprise between samples
The Tractor: Probabilistic astronomical source detection and measurement
TMBIDL: Single dish radio astronomy data reduction package

TRIPPy: Python-based Trailed Source Photometry
TTVFaster: First order eccentricity transit timing variations (TTVs)
zeldovich-PLT: Zel’dovich approximation initial conditions generator

March 2015 additions to the ASCL

Eleven codes were added to the ASCL in March, 2015:

AMADA: Analysis of Multidimensional Astronomical DAtasets
dust: Dust scattering and extinction in the X-ray
Galax2d: 2D isothermal Euler equations solver
GSD: Global Section Datafile access library
HELIOS-K: Opacity Calculator for Radiative Transfer

isochrones: Stellar model grid package
K2flix: Kepler pixel data visualizer
pYSOVAR: Lightcurves analysis
TAME: Tool for Automatic Measurement of Equivalent-width
UniPOPS: Unified data reduction suite

VESPA: False positive probabilities calculator