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[ascl:1102.019]
HOP: A Group-finding Algorithm for N-body Simulations

We describe a new method (HOP) for identifying groups of particles in N-body simulations. Having assigned to every particle an estimate of its local density, we associate each particle with the densest of the Nh particles nearest to it. Repeating this process allows us to trace a path, within the particle set itself, from each particle in the direction of increasing density. The path ends when it reaches a particle that is its own densest neighbor; all particles reaching the same such particle are identified as a group. Combined with an adaptive smoothing kernel for finding the densities, this method is spatially adaptive, coordinate-free, and numerically straight-forward. One can proceed to process the output by truncating groups at a particular density contour and combining groups that share a (possibly different) density contour. While the resulting algorithm has several user-chosen parameters, we show that the results are insensitive to most of these, the exception being the outer density cutoff of the groups.

[ascl:1509.007]
pycola: N-body COLA method code

pycola is a multithreaded Python/Cython N-body code, implementing the Comoving Lagrangian Acceleration (COLA) method in the temporal and spatial domains, which trades accuracy at small-scales to gain computational speed without sacrificing accuracy at large scales. This is especially useful for cheaply generating large ensembles of accurate mock halo catalogs required to study galaxy clustering and weak lensing. The COLA method achieves its speed by calculating the large-scale dynamics exactly using LPT while letting the N-body code solve for the small scales, without requiring it to capture exactly the internal dynamics of halos.

[ascl:1605.016]
zeldovich-PLT: Zel'dovich approximation initial conditions generator

zeldovich-PLT generates Zel'dovich approximation (ZA) initial conditions (i.e. first-order Lagrangian perturbation theory) for cosmological N-body simulations, optionally applying particle linear theory (PLT) corrections.

[ascl:1812.011]
GRAND-HOD: GeneRalized ANd Differentiable Halo Occupation Distribution

GRAND-HOD (GeneRalized ANd Differentiable Halo Occupation Distribution) takes a generalized Halo Occupation Distribution (HOD) prescription as input and outputs the corresponding mock galaxy catalogs in binary files. The code is differentiable and incorporates various generalizations to the standard HOD. It is written for the Abacus simulations, but the main functionalities can be easily adapted for other halo catalogs with the appropriate properties.

[ascl:1909.008]
RascalC: Fast code for galaxy covariance matrix estimation

RascalC quickly estimates covariance matrices from two- or three-point galaxy correlation functions. Given an input set of random particle locations and a two-point correlation function (or input set of galaxy positions), RascalC produces an estimate of the associated covariance for a given binning strategy, with non-Gaussianities approximated by a ‘shot-noise-rescaling’ parameter. For the 2PCF, the rescaling parameter can be calibrated by dividing the particles into jackknife regions and comparing sample to theoretical jackknife covariance. RascalC can also be used to compute Legendre-binned covariances and cross-covariances between different two-point correlation functions.

[ascl:2005.009]
s3PCF: Compute the 3-point correlation function in the squeezed limit

s3PCF computes the 3-point correlation function (3PCF) in the squeezed limit given galaxy positions and pair positions. The code is currently written specifically for the Abacus simulations, but the main functionalities can be also easily adapted for other galaxy catalogs with the appropriate properties.

[ascl:2005.020]
HIPSTER: HIgh-k Power Spectrum EstimatoR

HIPSTER (HIgh-k Power Spectrum EstimatoR) computes small-scale power spectra and isotropic bispectra for cosmological simulations and galaxy surveys of arbitrary shape. The code computes the Legendre multipoles of the power spectrum, *P _{ℓ}(k)*, or bispectrum

[ascl:2105.014]
encore: Efficient isotropic 2-, 3-, 4-, 5- and 6-point correlation functions

Philcox, Oliver H. E.; Slepian, Zachary; Hou, Jiamin; Warner, Craig; Cahn, Robert N.; Eisenstein, Daniel J.

encore (Efficient *N*-point Correlator Estimation) estimates the isotropic NPCF multipoles for an arbitrary survey geometry in *O*(*N*^{2}) time, with optional GPU support. The code features support for the isotropic 2PCF, 3PCF, 4PCF, 5PCF and 6PCF, with the option to subtract the Gaussian 4PCF contributions at the estimator level. For the 4PCF, 5PCF and 6PCF algorithms, the runtime is dominated by sorting the spherical harmonics into bins, which has complexity *O*(*N*_galaxy x *N*_bins^{3} x *N*_ell^{5}) [4PCF], *O*(*N*_galaxy x N_bins^{4} x N_ell^{8}) [5PCF] or *O*(*N*_galaxy x *N*_bins^{5} x *N*_ell^{11}) [6PCF]. The higher-point functions are slow to compute unless *N*_bins and *N*_ell are small.

[ascl:2312.015]
SUNBIRD: Neural-network-based models for galaxy clustering

Cuesta-Lazaro, Carolina; Paillas, Enrique; Yuan, Sihan; Cai, Yan-Chuan; Nadathur, Seshadri; Percival, Will J.; Beutler, Florian; de Mattia, Arnaud; Eisenstein, Daniel; Forero-Sanchez, Daniel; Padilla, Nelson; Pinon, Mathilde; Ruhlmann-Kleider, Vanina; Sánchez, Ariel G.; Valogiannis, Georgios; Zarrouk, Pauline

SUNBIRD trains neural-network-based models for galaxy clustering. It also incorporates pre-trained emulators for different summary statistics, including galaxy two-point correlation function, density-split clustering statistics, and old-galaxy cross-correlation function. These models have been trained on mock galaxy catalogs, and were calibrated to work for specific samples of galaxies. SUNBIRD implements routines with PyTorch to train new neural-network emulators.