Author Archives: Alice Allen

VAST poster at AAS 245

Screenshot of iPoster

Software is a vital part of astronomy research, and many software projects are available for anyone to use. The Virtual Astronomy Software Talks (VAST) seminar series provides a way for developers to share information about their software with the community. Using Zoom, one-hour VAST seminars are presented monthly and typically feature two software projects and include a discussion period to foster meaningful communication within the community. Other topics focused on software also also offered; past presentations have covered topics such as teaching computational astrophysics, building a coding community, and publishing software. Presentations are recorded and posted to the VAST YouTube channel, which now features over 20 previous seminars. This presentation covers how VAST is run, its growth in its second year, and its ExoVAST spinoff, and includes information on how to access VAST seminars and propose future talks.

Sverre Aarseth, father of open source stellar dynamics software, has passed on to a higher orbit

Sad news today from Simon Portegies Zwart, who wrote the following orbituary:

It is with great sadness that I have to inform you of the passing away of Sverre Aarseth on 28 December this year after 90 two-body orbits. Sverre Johannes Aarseth was born on July 20, 1934, in Norway.

Sverre was a student of Fred Hoyle, and later became the supervisor of Douglas Heggie and Elena Terlevich at the University of Cambridge’s Institute of Astronomy. He pioneered computational astrophysics, developing the NBODY family of codes that revolutionized our understanding of planet formation, stellar clusters, the dynamics of black holes, and galaxy clusters. His work laid the foundation for numerous advancements in dynamical astronomy, earning him the prestigious Brouwer Award in 1998.

His commitment to open science was evident long before the concept of open-source software became popular, as he freely distributed and supported his codes. Generations of astronomers have benefited from Sverre’s codes. In recognition of his contributions, asteroid 9836 Aarseth (1985 TU) was named in his honor. Fittingly, Sverre is currently observable between Virgo and Lyra, a celestial tribute to his lasting impact on the field.

Beyond his scientific pursuits, Sverre was an avid mountaineer and accomplished chess player. He earned the title of International Master for Correspondence Chess in 1981. The astronomical community celebrated his 80th birthday in Sexten Italy in 2014, where we climnbed the Tre Cime di Lavaredo (also called der Drei Sinnen, a pathetic small mountain for Sverre), almost missing his afternoon talk.

Generations of astronomers were entertained by his vivid stories of meeting tigers (in the wild), racing cars, and stormy mountain top sleep-overs. His lively personality, humor, and groundbreaking work will be remembered fondly. As he ascends to a higher orbit, we will cherish the memory of his vibrant personality, captivating stories, and the invaluable codes he wrote. His legacy will continue to inspire future generations of astrophysicists, much like the celestial bodies he spent his life studying.

We have been lucky to have orbited Sverre.

December 2024 additions to the ASCL

Thirty codes were added to the ASCL in December, 2024:

BADASS: Bayesian AGN Decomposition Analysis for SDSS Spectra
BlendingToolKit: Tools to create blend catalogs, produce training samples, and implement blending metrics
CLOWN: Cloud detection software for observatories with an all-sky camera
Codex Africanus: Radio astronomy algorithms library
cogsworth: Self-consistent population synthesis and galactic dynamics simulations

Combustion Toolbox: Gaseous combustion problem solver
Coport: Covariant polarized radiative transfer
CosmoFlow: A systematic approach to primordial correlators
dask-ms: xarray datasets from CASA tables
DIES: Dust radiative transfer with the immediate reemission method

exoTEDRF: Tools for end-to-end reduction of JWST exoplanet observations
FINUFFT: Flatiron Institute Nonuniform Fast Fourier Transform
FitTeD: Fitting Transients with Discs
ForestFlow: Lyman-alpha cosmology emulator
gwforge: Mock gravitational wave detector data generator

lintsampler: Efficient random sampling via linear interpolation
MARDIGRAS: MAss-Radius DIaGRAm with Sliders
mr-plotter: Mass-radius diagrams plotter
nifty-ls: Fast Lomb-Scargle periodogram
Particle_spray: Modeling globular cluster streams

pmwd: Particle Mesh With Derivatives
POSEIDON: Multidimensional atmospheric retrieval of exoplanet spectra
Siril: Astronomical image processing tool
Spectuner: Automated line identification of interstellar molecules
squishyplanet: Non-spherical exoplanet transit modeling

Stimela2: Workflow management framework for data reduction workflows
The Payne: Interpolate spectral models with neural networks
Twinkle: Calculate and plot spectral energy distribution of main-sequence stars
WD_models: WD photometry to physical parameters transformer
γ-Cascade V4: Gamma-ray propagation package

SciCodes poster at AGU24


The SciCodes Consortium (https://scicodes.net/) recognizes the need for editors and maintainers of research software registries and repositories to share knowledge of best practices and create standards. Our 37 members represent science organizations, institutions, and multidisciplinary research communities that span the institutions across disciplines including biological, medical, mathematical and physical sciences and engineering. These repositories play a pivotal role in strengthening research by enhancing the discoverability of software, thereby supporting transparency, reproducibility, and fostering efficiency through software reuse. Hence, through their stewardship of software, our members pursue common goals including the recognition of software as a first-class citizen in research and establishing metadata standards to enable searching across multiple software registries.

SciCodes grew from the Best Practices for Registries Task Force as part of the FORCE11 Software Citation Implementation Working Group. These best practices (Garijo et al., 2022) are:

  • Provide a public scope statement
  • Provide guidance for users
  • Provide guidance to software contributors
  • Establish an authorship policy
  • Share your metadata schema
  • Stipulate conditions of use
  • State a privacy policy
  • Provide a retention policy
  • Disclose your end-of-life policy

The group regularly self assesses for compliance. Examples of how these best practices are implemented in practice are linked to from our website.

We invite the community to join our monthly discussions to:

    • Discuss challenges and share solutions to common issues that arise in managing our resources
    • Strengthen resources through implementation of identified best practices
    • Keep up with and share advances through monthly presentations
    • Speed adoption of CodeMeta and CFF standards to improve software citation and discoverability

References
Garijo, D. et al., 2022. Nine best practices for research software registries and repositories. PeerJ Computer Science 8:e1023 https://doi.org/10.7717/peerj-cs.1023

Download (PDF; working links)

November 2024 additions to the ASCL

Thirty codes were added to the ASCL in November, 2024:

Astrocats: Construct astronomical catalogs
atlas-fit: Python tool to fit solar spectra to a known atlas
BSAVI: Bayesian SAmple VIsualizer for cosmological likelihoods
CLASS LVDM: Cosmological model of Lorentz invariance violation in gravity and dark matter
DAMSPI: DArk Matter SPIkes in EAGLE simulations

DarkMatters: Multi-frequency emissions from Dark Matter annihilation and decay
DarkRayNet: Simulation tool for indirect Dark Matter searches
Diagnose: Spectral classification code
DustPOL-py: Numerical modeling of dust polarization
EFTofPNG: Effective Field Theory of Post-Newtonian Gravity

fits_warp: Warp catalogues and images to dedistort the effects of the ionosphere
flashcurve: Fast generation of adaptive-binning light curves with Fermi-LAT data
GAz: Genetic Algorithm for photometric redshift estimation
HBSGSep: Hierarchical Bayesian Star-Galaxy Separations
HIILines: Analytical ionized ISM emission line model

IcyDwarf: Coupled geophysical-geochemical-orbital evolution model of icy worlds
jaxspec: X-ray spectra Bayesian analysis
McFine: Muli-component hyperfine fitting tool
MMLPhoto-z: Cross-modal contrastive learning method for estimating photo-z of quasars
mochi_class: Modelling Optimization to Compute Horndeski in CLASS

Mosaic: Multibeamformed Observation Simulation And Interferometry Characterization
NE2001p: Python implementation of the NE2001 Galactic electron density model
NEMESISPY: Modeling exoplanet spectra
pycosmicstar: PYthon cosmic STar formAtion Rate
PyMerger: Einstein Telescope binary black hole merger detector

ReverseDiff: Reverse mode automatic Differentiation for Julia
SMINT: Structure Model INTerpolator
spectroflat: Generic Python calibration library for spectro-polarimetric data
threedhst: 3D-HST grism analysis software
unicorn: Full 3D-HST grism pipeline

ASCL poster on reasons to register your software with ASCL at ADASS XXXIV


This presentation covers the benefits of registering astronomy research software with the Astrophysics Source Code Library (ASCL, ascl.net), a free online registry for software used in astronomy research. Indexed by ADS and Clarivate’s Web of Science, the ASCL currently contains over 3500 codes, and its entries have been cited over 17,000 times. Registering your code with the ASCL is easy with our online submissions system. Making your software available for examination shows confidence in your research and makes your research more transparent, reproducible, and falsifiable. ASCL registration allows your software to be cited on its own merits and provides a citation that is trackable and accepted by all astronomy journals and journals such as Science and Nature. Adding your code to the ASCL also allows others to find your code more easily, as it can then be found not only in the ASCL itself, but also in ADS, Web of Science, and Google Scholar.

Download poster (PDF)

October 2024 additions to the ASCL

Twenty codes were added to the ASCL in October, 2024:

ARK: 3D hydrodynamics code for the study of convective problems
BayeSED: Bayesian SED synthesis and analysis of galaxies and AGNs
CloudCovErr.jl: Debias and improve error bar estimates for photometry
DGEM: 3D dust continuum radiative transfer code for method comparison
DIRTY: 3D dust radiative transfer for dusty astrophysical sources

Exo-REM: 1D self-consistent radiative-equilibrium model for exoplanetary atmospheres
Falcon-DM: N-body code for inspirals in DM spikes
fastPTA: Constraining power of PTA configurations forecaster
forcepho: Generative modeling galaxy photometry for JWST
GalCraft: Building integral-field spectrograph data cubes of the Milky Way

Gaspery: Radial velocity (RV) observing strategies
Heracles: Harmonic-space statistics on the sphere
iPIC3D: Multi-scale plasma simulations of plasma
Kamodo: Space weather data access, interpolation, and visualization
lensitbiases: rFFT-based flat-sky CMB lensing tools

measure_extinction: Measure interstellar dust extinction using pair method
pysymlog: Symmetric (signed) logarithm scale for Python plots
solar-vSI: Calculate solar antineutrino spectra
SSOF: Data-driven models for extremely precise radial velocity (EPRV) spectra
vortex-p: Helmholtz-Hodge and Reynolds decomposition algorithm for particle-based simulations

September 2024 additions to the ASCL

Twenty codes were added to the ASCL in September, 2024:

AMReX: Software framework for block structured AMR
BeyonCE: Beyond Common Eclipsers
ClassiPyGRB: Swift/BAT GRB visualizer and classifier
cloudyfsps: Python interface between FSPS and Cloudy
DarsakX: X-ray telescope design and imaging performance analyzer

FGCluster: ForeGround Clustering
GASTLI: GAS gianT modeL for Interiors
MCMole3D: Statistical model for galactic molecular clouds
Padé: Protoplanetary disk turbulence simulator
PICASSO: Inpainter for point-sources for synchrotron and dust polarization

planetMagFields: Routines to plot magnetic fields of planets in our solar system
PyExoCross: Molecular line lists post-processor
pyRRG: Weak lensing shape measurement code
PySR: High-Performance Symbolic Regression in Python and Julia
resonances: Mean-motion resonances in Solar system and other planetary systems identifier

Stardust: Composite template fitting software
SUSHI: Semi-blind Unmixing with Sparsity for Hyperspectral Images
symbolic_pofk: Precise symbolic emulators of the linear and nonlinear matter power spectrum
UltraDark: Cosmological scalar fields simulator
WISE2MBH: Mass of supermassive black holes estimator

August 2024 additions to the ASCL

Fifteen codes were added to the ASCL in August, 2024:

21cmFirstCLASS: Generate initial conditions at recombination
Astronify: Astronomical data sonification
BELTCROSS2: Calculate the closest approaches of asteroids to meteoroid streams
Cue: Nebular emission modeling
GRBoondi: AMR-based code to evolve generalized Proca fields on arbitrary fixed backgrounds

HaloFlow: Simulation-Based Inference (SBI) using forward modeled galaxy photometry
LADDER: Learning Algorithm for Deep Distance Estimation and Reconstruction
M_SMiLe: Magnification Statistics of Micro-Lensing
pySDR: Wrapper for sharpened dimensionality reduction
RadioSED: Radio SED fitting for AGN

Sailfish: GPU-accelerated grid-based astrophysics gas dynamics code
SAQQARA: Stochastic gravitational wave background analysis
SDR: Sharpened Dimensionality Reduction
SHARC: SHArpened Dimensionality Reduction and Classification
SonAD: Sonification of astronomical data

July 2024 additions to the ASCL

Twenty codes were added to the ASCL in July, 2024:

AstroCLIP: Multimodal contrastive pretraining for astronomical data
ATM: Asteroid Thermal Modeling
BaCoN: BAyesian COsmological Network
bigfile: A reproducible massively parallel IO library for hierarchical data
cola_halo: Parallel cosmological N-body simulator

Fof: Friends-of-friends code to find groups
Forklens: Deep learning weak lensing shear
GRDzhadzha: Evolve matter on curved spacetimes
Heimdall: GPU accelerated transient detection pipeline for radio astronomy
hipipe: VLT/HiRISE reduction pipeline

MAKEE: MAuna Kea Echelle Extraction
Package-X: Calculate Feynman loop integrals
PFFT: Parallel fast Fourier transforms
photGalIMF: Stellar mass and luminosity evolution calculator
pony3d: Efficient island-finding tool for radio spectral line imaging

provabgs: SED modeling tools for PROVABGS
pycosie: Python analysis code used on Technicolor Dawn
pyFAT: Python Fully Automated TiRiFiC
RealSim: Statistical observational realism for synthetic images from galaxy simulations
UFalcon: Ultra Fast Lightcone