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[ascl:1107.009] REAS3: Modeling Radio Emission from Cosmic Ray Air Showers

The freely available Monte Carlo code REAS for modelling radio emission from cosmic ray air showers has evolved to include the full complexity of air shower physics. REAS3 improves the calculation of the emission contributions, which was not fully consistent in earlier versions of REAS, by incorporating the missing radio emission due to the variation of the number of charged particles during the air shower evolution using an "end-point formalism". With the inclusion of these emission contributions, the structure of the simulated radio pulses changes from unipolar to bipolar, and the azimuthal emission pattern becomes nearly symmetric. Remaining asymmetries can be explained by radio emission due to the variation of the net charge excess in air showers, which is automatically taken into account in the new implementation. REAS3 constitutes the first self-consistent time-domain implementation based on single particle emission taking the full complexity of air shower physics into account, and is freely available for all interested users. REAS3 has been superseded by CoREAS (ascl:1406.003).

[ascl:1110.016] REBOUND: Multi-purpose N-body code for collisional dynamics

REBOUND is a multi-purpose N-body code which is freely available under an open-source license. It was designed for collisional dynamics such as planetary rings but can also solve the classical N-body problem. It is highly modular and can be customized easily to work on a wide variety of different problems in astrophysics and beyond.

REBOUND comes with three symplectic integrators: leap-frog, the symplectic epicycle integrator (SEI) and a Wisdom-Holman mapping (WH). It supports open, periodic and shearing-sheet boundary conditions. REBOUND can use a Barnes-Hut tree to calculate both self-gravity and collisions. These modules are fully parallelized with MPI as well as OpenMP. The former makes use of a static domain decomposition and a distributed essential tree. Two new collision detection modules based on a plane-sweep algorithm are also implemented. The performance of the plane-sweep algorithm is superior to a tree code for simulations in which one dimension is much longer than the other two and in simulations which are quasi-two dimensional with less than one million particles.

[ascl:1106.026] RECFAST: Calculate the Recombination History of the Universe

RECFAST calculates the recombination of H, HeI, and HeII in the early Universe; this involves a line-by-line treatment of each atomic level. It differs in comparison to previous calculations in two major ways: firstly, the ionization fraction x_e is approximately 10% smaller for redshifts <~800, due to non-equilibrium processes in the excited states of H, and secondly, HeI recombination is much slower than previously thought, and is delayed until just before H recombines. RECFAST enables fast computation of the ionization history (and quantities such as the power spectrum of CMB anisotropies which depend on it) for arbitrary cosmologies.

[ascl:1507.017] REDSPEC: NIRSPEC data reduction

REDSPEC is an IDL based reduction package designed with NIRSPEC in mind though can be used to reduce data from other spectrographs as well. REDSPEC accomplishes spatial rectification by summing an A+B pair of a calibration star to produce an image with two spectra; the image is remapped on the basis of polynomial fits to the spectral traces and calculation of gaussian centroids to define their separation, producing straight spectral traces with respect to the detector rows. The raw images are remapped onto a coordinate system with uniform intervals in spatial extent along the slit and in wavelength along the dispersion axis.

[ascl:1508.003] REDUCEME: Long-slit spectroscopic data reduction and analysis

The astronomical data reduction package REDUCEME reduces and analyzes long-slit spectroscopic data. The package uses the unformatted FORTRAN raw data format, so requires FITS files be transformed to REDUCEME format; the reverse operation (from REDUCEME to FITS format) is also available. The package is a set of programs written in FORTRAN 77 and includes shell scripts (using the C shell syntax) to perform routine tasks; it can be extended by the inclusion of external programs. REDUCEME uses PGPLOT (ascl:1103.002) for line plots and images, and a subset of subroutines, called BUTTON, enables the user to communicate interactively with the image display employing graphic buttons. One advantage of using REDUCEME is that for each image an associated error image can also be processed throughout the reduction process, allowing for a careful control of the error propagation.

[ascl:1401.004] Reflex: Graphical workflow engine for data reduction

Reflex provides an easy and flexible way to reduce VLT/VLTI science data using the ESO pipelines. It allows graphically specifying the sequence in which the data reduction steps are executed, including conditional stops, loops and conditional branches. It eases inspection of the intermediate and final data products and allows repetition of selected processing steps to optimize the data reduction. The data organization necessary to reduce the data is built into the system and is fully automatic; advanced users can plug their own modules and steps into the data reduction sequence. Reflex supports the development of data reduction workflows based on the ESO Common Pipeline Library. Reflex is based on the concept of a scientific workflow, whereby the data reduction cascade is rendered graphically and data seamlessly flow from one processing step to the next. It is distributed with a number of complete test datasets so users can immediately start experimenting and familiarize themselves with the system.

[ascl:1206.001] RegiStax: Alignment, stacking and processing of images

RegiStax is software for alignment/stacking/processing of images; it was released over 10 years ago and continues to be developed and improved. The current version is RegiStax 6, which supports the following formats: AVI, SER, RFL (RegiStax Framelist), BMP, JPG, TIF, and FIT. This version has a shorter and simpler processing sequence than its predecessor, and optimizing isn't necessary anymore as a new image alignment method optimizes directly. The interface of RegiStax 6 has been simplified to look more uniform in appearance and functionality, and RegiStax 6 now uses Multi-core processing, allowing the user to have up to have multiple cores(recommended to use maximally 4) working simultaneous during alignment/stacking.

[ascl:1404.012] RegPT: Regularized cosmological power spectrum

RegPT computes the power spectrum in flat wCDM class models based on the RegPT treatment when provided with either of transfer function or matter power spectrum. It then gives the multiple-redshift outputs for power spectrum, and optionally provides correlation function data. The Fortran code has two major options for power spectrum calculations; -fast, which quickly computes the power spectrum at two-loop level (typically a few seconds) using the pre-computed data set of PT kernels for fiducial cosmological models, and -direct, in which the code first applies the fast method, and then follows the regularized expression for power spectrum to directly evaluate the multi-dimensional integrals. The output results are the power spectrum of direct calculation and difference of the results between fast and direct method. The code also gives the data set of PT diagrams necessary for power spectrum calculations from which the power spectrum can be constructed.

[ascl:1505.021] relline: Relativistic line profiles calculation

relline calculates relativistic line profiles; it is compatible with the common X-ray data analysis software XSPEC (ascl:9910.005) and ISIS (ascl:1302.002). The two basic forms are an additive line model (RELLINE) and a convolution model to calculate relativistic smearing (RELCONV).

[ascl:1904.008] repack: Repack and compress line-transition data

repack re-packs and compresses line-transition data for radiative-transfer calculations. It identifies the strong lines that dominate the spectrum from the large-majority of weaker lines, returning a binary line-by-line (LBL) file with the strong lines info (wavenumber, Elow, gf, and isotope ID), and an ASCII file with the combined contribution of the weaker lines compressed into a continuum extinction coefficient (in cm-1 amagat-1) as function of wavenumber and temperature.

[ascl:1612.022] REPS: REscaled Power Spectra for initial conditions with massive neutrinos

REPS (REscaled Power Spectra) provides accurate, one-percent level, numerical simulations of the initial conditions for massive neutrino cosmologies, rescaling the late-time linear power spectra to the simulation initial redshift.

[ascl:1809.016] RequiSim: Variance weighted overlap calculator

RequiSim computes the Variance Weighted Overlap, which is a measure of the bias on the lensing signal from power spectrum modelling bias for any non-linear model. It assumes that the bias on the power spectrum is Gaussian with a covariance described by a user-provided knowledge matrix that describes the covariance in the bias on the power spectrum. The data from the Euclid wide-field survey are included.

[ascl:1505.028] RESOLVE: Bayesian algorithm for aperture synthesis imaging in radio astronomy

RESOLVE is a Bayesian inference algorithm for image reconstruction in radio interferometry. It is optimized for extended and diffuse sources. Features include parameter-free Bayesian reconstruction of radio continuum data with a focus on extended and weak diffuse sources, reconstruction with uncertainty propagation dependent on measurement noise, and estimation of the spatial correlation structure of the radio astronomical source. RESOLVE provides full support for measurement sets and includes a simulation tool (if uv-coverage is provided).

[ascl:1907.023] REVOLVER: REal-space VOid Locations from suVEy Reconstruction

REVOLVER reconstructs real space positions from redshift-space tracer data by subtracting RSD through FFT-based reconstruction (optional) and applies void-finding algorithms to create a catalogue of voids in these tracers. The tracers are normally galaxies from a redshift survey but could also be halos or dark matter particles from a simulation box. Two void-finding routines are provided. The first is based on ZOBOV (ascl:1304.005) and uses Voronoi tessellation of the tracer field to estimate the local density, followed by a watershed void-finding step. The second is a voxel-based method, which uses a particle-mesh interpolation to estimate the tracer density, and then uses a similar watershed algorithm. Input data files can be in FITS format, or ASCII- or NPY-formatted data arrays.

[ascl:1710.002] rfpipe: Radio interferometric transient search pipeline

rfpipe supports Python-based analysis of radio interferometric data (especially from the Very Large Array) and searches for fast radio transients. This extends on the rtpipe library (ascl:1706.002) with new approaches to parallelization, acceleration, and more portable data products. rfpipe can run in standalone mode or be in a cluster environment.

[ascl:1711.006] RGW: Goodman-Weare Affine-Invariant Sampling

RGW is a lightweight R-language implementation of the affine-invariant Markov Chain Monte Carlo sampling method of Goodman & Weare (2010). The implementation is based on the description of the python package emcee (ascl:1303.002).

[ascl:1502.001] RH 1.5D: Polarized multi-level radiative transfer with partial frequency distribution

RH 1.5D performs Zeeman multi-level non-local thermodynamical equilibrium calculations with partial frequency redistribution for an arbitrary amount of chemical species. Derived from the RH code and written in C, it calculates spectra from 3D, 2D or 1D atmospheric models on a column-by-column basis (or 1.5D). It includes optimization features to speed up or improve convergence, which are particularly useful in dynamic models of chromospheres. While one should be aware of its limitations, the calculation of spectra using the 1.5D or column-by-column is a good approximation in many cases, and generally allows for faster convergence and more flexible methods of improving convergence. RH 1.5D scales well to at least tens of thousands of CPU cores.

[ascl:1611.009] RHOCUBE: 3D density distributions modeling code

RHOCUBE models 3D density distributions on a discrete Cartesian grid and their integrated 2D maps. It can be used for a range of applications, including modeling the electron number density in LBV shells and computing the emission measure. The RHOCUBE Python package provides several 3D density distributions, including a powerlaw shell, truncated Gaussian shell, constant-density torus, dual cones, and spiralling helical tubes, and can accept additional distributions. RHOCUBE provides convenient methods for shifts and rotations in 3D, and if necessary, an arbitrary number of density distributions can be combined into the same model cube and the integration ∫ dz performed through the joint density field.

[ascl:1410.005] RICH: Numerical simulation of compressible hydrodynamics on a moving Voronoi mesh

RICH (Racah Institute Computational Hydrodynamics) is a 2D hydrodynamic code based on Godunov's method. The code, largely based on AREPO, acts on an unstructured moving mesh. It differs from AREPO in the interpolation and time advancement scheme as well as a novel parallelization scheme based on Voronoi tessellation. Though not universally true, in many cases a moving mesh gives better results than a static mesh: where matter moves one way and a sound wave is traveling in the other way (such that relative to the grid the wave is not moving), a static mesh gives better results than a moving mesh. RICH is designed in an object oriented, user friendly way that facilitates incorporation of new algorithms and physical processes.

[ascl:1811.009] RLOS: Time-resolved imaging of model astrophysical jets

RLOS (Relativistic Line Of Sight) uses hydrocode output data, such as that from PLUTO (ascl:1010.045), to create synthetic images depicting what a model relativistic astrophysical jet looks like to a stationary observer. The approximate time-delayed imaging algorithm used is implemented within existing line-of-sight code. The software has the potential to study a variety of dynamical astrophysical phenomena in collaboration with other imaging and simulation tools.

[ascl:1708.011] RM-CLEAN: RM spectra cleaner

RM-CLEAN reads in dirty Q and U cubes, generates rmtf based on the frequencies given in an ASCII file, and cleans the RM spectra following the algorithm given by Brentjens (2007). The output cubes contain the clean model components and the CLEANed RM spectra. The input cubes must be reordered with mode=312, and the output cubes will have the same ordering and thus must be reordered after being written to disk. RM-CLEAN runs as a MIRIAD (ascl:1106.007) task and a Python wrapper is included with the code.

[ascl:1806.024] RMextract: Ionospheric Faraday Rotation calculator

RMextract calculates Ionospheric Faraday Rotation for a given epoch, location and line of sight. This Python code extracts TEC, vTEC, Earthmagnetic field and Rotation Measures from GPS and WMM data for radio interferometry observations.

[ascl:1409.011] rmfit: Forward-folding spectral analysis software

Rmfit uses a forward-folding technique to obtain the best-fit parameters for a chosen model given user-selected source and background time intervals from data files containing observed count rates and a corresponding detector response matrix. rmfit displays lightcurves and spectra using a graphical interface that enables user-defined integrated or time-resolved spectral fits and binning in either time or energy. Originally developed for the analysis of BATSE Gamma-Ray Burst (GRB) spectroscopy, rmfit is a tool for the spectroscopy of transient sources; it accommodates the Fermi GBM and LAT data and Swift BAT.

[ascl:1403.011] RMHB: Hierarchical Reverberation Mapping

RMHB is a hierarchical Bayesian code for reverberation mapping (RM) that combines results of a sparsely sampled broad line region (BLR) light curve and a large sample of active galactic nuclei (AGN) to infer properties of the sample of the AGN. The key idea of RM is to measure the time lag τ between variations in the continuum emission from the accretion disc and subsequent response of the broad line region (BLR). The measurement of τ is typically used to estimate the physical size of the BLR and is combined with other measurements to estimate the black hole mass MBH. A major difficulty with RM campaigns is the large amount of data needed to measure τ. RMHB allows a clear interpretation of a posterior distribution for hyperparameters describing the sample of AGN.

[ascl:1104.008] Rmodel: Determining Stellar Population Parameters

This program determines stellar population parameters (e.g. age, metallicity, IMF slope,...), using as input a pair of line-strength indices, through the interpolation in SSP model predictions. Both linear and bivariate fits are computed to perform the interpolation.

[ascl:1603.008] ROBAST: ROOT-based ray-tracing library for cosmic-ray telescopes

ROBAST (ROOT-based simulator for ray tracing) is a non-sequential ray-tracing simulation library developed for wide use in optical simulations of gamma-ray and cosmic-ray telescopes. The library is written in C++ and fully utilizes the geometry library of the ROOT analysis framework, and can build the complex optics geometries typically used in cosmic ray experiments and ground-based gamma-ray telescopes.

[ascl:1808.011] Robbie: Radio transients and variables detection workflow

Robbie automates cataloging sources, finding variables, and identifying transients in the image domain. It works in a batch processing paradigm with a modular design so components can be swapped out or upgraded to adapt to different input data while retaining a consistent and coherent methodological approach. Robbie is based on commonly used and open software, including AegeanTools (ascl:1212.009) and STILS/TOPCAT (ascl:1101.010).

[ascl:1502.023] ROBOSPECT: Width fitting program

ROBOSPECT, written in C, automatically measures and deblends line equivalent widths for absorption and emission spectra. ROBOSPECT should not be used for stars with spectra in which there is no discernible continuum over large wavelength regions, nor for the most carbon-enhanced stars for which spectral synthesis would be favored. Although ROBOSPECT was designed for metal-poor stars, it is capable of fitting absorption and emission features in a variety of astronomical sources.

[ascl:1201.002] Roche: Visualization and analysis tool for Roche-lobe geometry of evolving binaries

Roche is a visualization and analysis tool for drawing the Roche-lobe geometry of evolving binaries. Roche can be used as a standalone program reading data from the command line or from a file generated by SeBa (ascl:1201.003). Eventually Roche will be able to read data from any other binary evolution program. Roche requires Starlab (ascl:1010.076) version 4.1.1 or later and the pgplot (ascl:1103.002) libraries. Roche creates a series of images, based on the SeBa output file SeBa.data, displaying the evolutionary state of a binary.

[ascl:1210.008] Rockstar: Phase-space halo finder

Rockstar (Robust Overdensity Calculation using K-Space Topologically Adaptive Refinement) identifies dark matter halos, substructure, and tidal features. The approach is based on adaptive hierarchical refinement of friends-of-friends groups in six phase-space dimensions and one time dimension, which allows for robust (grid-independent, shape-independent, and noise-resilient) tracking of substructure. Our method is massively parallel (up to 10^5 CPUs) and runs on the largest current simulations (>10^10 particles) with high efficiency (10 CPU hours and 60 gigabytes of memory required per billion particles analyzed). Rockstar offers significant improvement in substructure recovery as compared to several other halo finders.

[ascl:1712.009] RODRIGUES: RATT Online Deconvolved Radio Image Generation Using Esoteric Software

RODRIGUES (RATT Online Deconvolved Radio Image Generation Using Esoteric Software) is a web-based radio telescope simulation and reduction tool. From a technical perspective it is a web based parameterized docker container scheduler with a result set viewer.

[ascl:1907.028] ROHSA: Separation of diffuse sources in hyper-spectral data

ROHSA (Regularized Optimization for Hyper-Spectral Analysis) reveals the statistical properties of interstellar gas through atomic and molecular lines. It uses a Gaussian decomposition algorithm based on a multi-resolution process from coarse to fine grid to decompose any kind of hyper-spectral observations into a sum of coherent Gaussian. Optimization is performed on the whole data cube at once to obtain a solution with spatially smooth parameters.

[ascl:1902.006] RPFITS: Routines for reading and writing RPFITS files

The RPFITS data file format records synthesis visibility data obtained from the Australia Telescope Compact Array (ATCA) at Narrabri, NSW. It is also used for single-dish spectral line data obtained from Parkes and Mopra, including Parkes multibeam data. RPFITS superficially resembles random group FITS, but differs in important respects, making it incompatible with standard FITS software such as FITSIO (ascl:1010.001) and FTOOLS (ascl:9912.002) and, in particular, it precludes the use of fv (ascl:1205.005). The RPFITS Fortran library contains routines for reading and writing RPFITS files. A header file, RPFITS.h, is provided to facilitate usage by C and C++ applications. Also included is rpfhdr, a utility for viewing RPFITS headers (it also works for standard FITS), and rpfex for extracting selected scans from an RPFITS file.

[ascl:1905.015] rPICARD: Radboud PIpeline for the Calibration of high Angular Resolution Data

rPICARD (Radboud PIpeline for the Calibration of high Angular Resolution Data) reduces data from different VLBI arrays, including high-frequency and low-sensitivity arrays, and supports continuum, polarization, and phase-referencing observations. Built on the CASA (ascl:1107.013) framework, it uses CASA for CLEAN imaging and self-calibration, and can be run non-interactively after only a few non-default input parameters are set. rPICARD delivers high-quality calibrated data and large bandwidth data can be processed within reasonable computing times.

[ascl:1808.002] rsigma: Resonant disturbance

rsigma calculates the resonant disturbing function, R(sigma), for a massless particle in an arbitrary orbit perturbed by a planet in circular orbit. This function defines the strength of the resonance (its semi-amplitude) and the location of the stable equilibrium points (the minima). It depends on the variable sigma called critical angle and on the particle's orbital elements a, e, i and the argument of the perihelion. R(sigma) is numerically calculated and the code is valid for arbitrary eccentricities and inclinations, including retrograde orbits.

[ascl:1607.015] RT1D: 1D code for Rayleigh-Taylor instability

The parallel one-dimensional moving-mesh hydrodynamics code RT1D reproduces the multidimensional dynamics from Rayleigh-Taylor instability in supernova remnants.

[ascl:1706.002] rtpipe: Searching for Fast Radio Transients in Interferometric Data

rtpipe (real-time pipeline) analyzes radio interferometric data with an emphasis on searching for transient or variable astrophysical sources. The package combines single-dish concepts such as dedispersion and filters with interferometric concepts, including images and the uv-plane. In contrast to time-domain data recorded with large single-dish telescopes, visibilities from interferometers can precisely localize sources anywhere in the entire field of view. rtpipe opens interferometers to the study of fast transient sky, including sources like pulsars, stellar flares, rotating radio transients, and fast radio bursts. Key portions of the search pipeline, such as image generation and dedispersion, have been accelerated. That, in combination with its multi-threaded, multi-node design, makes rtpipe capable of searching millisecond timescale data in real time on small compute clusters.

[ascl:1802.011] runDM: Running couplings of Dark Matter to the Standard Model

runDM calculates the running of the couplings of Dark Matter (DM) to the Standard Model (SM) in simplified models with vector mediators. By specifying the mass of the mediator and the couplings of the mediator to SM fields at high energy, the code can calculate the couplings at low energy, taking into account the mixing of all dimension-6 operators. runDM can also extract the operator coefficients relevant for direct detection, namely low energy couplings to up, down and strange quarks and to protons and neutrons.

[ascl:1406.007] RV: Radial Components of Observer's Velocity

The RV program produces a report listing the components, in a given direction, of the observer's velocity on a given date. This allows an observed radial velocity to be referred to an appropriate standard of rest -- typically either the Sun or an LSR.

As a secondary function, RV computes light time components to the Sun, thus allowing the times of phenomena observed from a terrestrial observatory to be referred to a heliocentric frame of reference. n.b. It will of course, in addition, be necessary to express the observations in the appropriate timescale as well as applying light time corrections. In particular, it is likely that an observed UTC will need to be converted to TDB as well as being corrected to the Sun.)

RV is distributed with the Starlink software collection (ascl:1110.012) and uses SLALIB (ascl:1403.025).

[ascl:1505.020] rvfit: Radial velocity curves fitting for binary stars or exoplanets

rvfit, developed in IDL 7.0, fits non-precessing keplerian radial velocity (RV) curves for double-line and single-line binary stars or exoplanets. It fits a simple keplerian model to the observed RV and computes the seven parameters (six for a single-line system) from the model. Some parameters can be fixed beforehand if they are known, for instance, if photometric observations are available. The fit is done using an Adaptive Simulated Annealing algorithm optimized for this specific task. Simulated Annealing methods are powerful heuristic algorithms to minimize functions in multiparametric spaces.

[ascl:1210.031] RVLIN: Fitting Keplerian curves to radial velocity data

The RVLIN package for IDL is a set of routines that quickly fits an arbitrary number of Keplerian curves to radial velocity data. It can handle data from multiple telescopes (i.e. it solves for the offset), constraints on P, e, and time of peri passage, and can incorporate transit timing data. The code handles fixed periods and circular orbits in combination and transit time constraints, including for multiple transiting planets.

[ascl:9912.003] RVSAO 2.0: Digital Redshifts and Radial Velocities

RVSAO is a set of programs to obtain redshifts and radial velocities from digital spectra. RVSAO operates in the IRAF (Tody 1986, 1993) environment. The heart of the system is xcsao, which implements the cross-correlation method, and is a direct descendant of the system built by Tonry and Davis (1979). emsao uses intelligent heuristics to search for emission lines in spectra, then fits them to obtain a redshift. sumspec shifts and sums spectra to build templates for cross-correlation. linespec builds synthetic spectra given a list of spectral lines. bcvcorr corrects velocities for the motion of the earth. We discuss in detail the parameters necessary to run xcsao and emsao properly. We discuss the reliability and error associated with xcsao derived redshifts. We develop an internal error estimator, and we show how large, stable surveys can be used to develop more accurate error estimators. We develop a new methodology for building spectral templates for galaxy redshifts. We show how to obtain correlation velocities using emission line templates. Emission line correlations are substantially more efficient than the previous standard technique, automated emission line fitting. We compare the use of RVSAO with new methods, which use Singular Value Decomposition and $chi^2$ fitting techniques.

[ascl:1907.013] RVSpecFit: Radial velocity and stellar atmospheric parameter fitting

RVSpecFit determines radial velocities and stellar atmospheric parameters from spectra by direct pixel fitting by interpolated stellar templates. The code doesn't require spectrum normalization and can deal with non-flux calibrated spectra. RVSpecFit is able to fit multiple spectra simultaneously.

[ascl:1606.008] s2: Object oriented wrapper for functions on the sphere

The s2 package can represent any arbitrary function defined on the sphere. Both real space map and harmonic space spherical harmonic representations are supported. Basic sky representations have been extended to simulate full sky noise distributions and Gaussian cosmic microwave background realisations. Support for the representation and convolution of beams is also provided. The code requires HEALPix (ascl:1107.018) and CFITSIO (ascl:1010.001).

[ascl:1110.013] S2HAT: Scalable Spherical Harmonic Transform Library

Many problems in astronomy and astrophysics require a computation of the spherical harmonic transforms. This is in particular the case whenever data to be analyzed are distributed over the sphere or a set of corresponding mock data sets has to be generated. In many of those contexts, rapidly improving resolutions of both the data and simulations puts increasingly bigger emphasis on our ability to calculate the transforms quickly and reliably.

The scalable spherical harmonic transform library S2HAT consists of a set of flexible, massively parallel, and scalable routines for calculating diverse (scalar, spin-weighted, etc) spherical harmonic transforms for a class of isolatitude sky grids or pixelizations. The library routines implement the standard algorithm with the complexity of O(n^3/2), where n is a number of pixels/grid points on the sphere, however, owing to their efficient parallelization and advanced numerical implementation, they achieve very competitive performance and near perfect scalability. S2HAT is written in Fortran 90 with a C interface. This software is a derivative of the spherical harmonic transforms included in the HEALPix package and is based on both serial and MPI routines of its version 2.01, however, since version 2.5 this software is fully autonomous of HEALPix and can be compiled and run without the HEALPix library.

[ascl:1211.001] S2LET: Fast wavelet analysis on the sphere

S2LET provides high performance routines for fast wavelet analysis of signals on the sphere. It uses the SSHT code built on the MW sampling theorem to perform exact spherical harmonic transforms on the sphere. The resulting wavelet transform implemented in S2LET is theoretically exact, i.e. a band-limited signal can be recovered from its wavelet coefficients exactly and the wavelet coefficients capture all the information. S2LET also supports the HEALPix sampling scheme, in which case the transforms are not theoretically exact but achieve good numerical accuracy. The core routines of S2LET are written in C and have interfaces in Matlab, IDL and Java. Real signals can be written to and read from FITS files and plotted as Mollweide projections.

[ascl:1103.003] S2PLOT: Three-dimensional (3D) Plotting Library

We present a new, three-dimensional (3D) plotting library with advanced features, and support for standard and enhanced display devices. The library - S2PLOT - is written in C and can be used by C, C++ and FORTRAN programs on GNU/Linux and Apple/OSX systems. S2PLOT draws objects in a 3D (x,y,z) Cartesian space and the user interactively controls how this space is rendered at run time. With a PGPLOT inspired interface, S2PLOT provides astronomers with elegant techniques for displaying and exploring 3D data sets directly from their program code, and the potential to use stereoscopic and dome display devices. The S2PLOT architecture supports dynamic geometry and can be used to plot time-evolving data sets, such as might be produced by simulation codes. In this paper, we introduce S2PLOT to the astronomical community, describe its potential applications, and present some example uses of the library.

[ascl:1111.003] Saada: A Generator of Astronomical Database

Saada transforms a set of heterogeneous FITS files or VOtables of various categories (images, tables, spectra, etc.) in a powerful database deployed on the Web. Databases are located on your host and stay independent of any external server. This job doesn’t require writing code. Saada can mix data of various categories in multiple collections. Data collections can be linked each to others making relevant browsing paths and allowing data-mining oriented queries. Saada supports 4 VO services (Spectra, images, sources and TAP) . Data collections can be published immediately after the deployment of the Web interface.

[ascl:1306.001] SAC: Sheffield Advanced Code

The Sheffield Advanced Code (SAC) is a fully non-linear MHD code designed for simulations of linear and non-linear wave propagation in gravitationally strongly stratified magnetized plasma. It was developed primarily for the forward modelling of helioseismological processes and for the coupling processes in the solar interior, photosphere, and corona; it is built on the well-known VAC platform that allows robust simulation of the macroscopic processes in gravitationally stratified (non-)magnetized plasmas. The code has no limitations of simulation length in time imposed by complications originating from the upper boundary, nor does it require implementation of special procedures to treat the upper boundaries. SAC inherited its modular structure from VAC, thereby allowing modification to easily add new physics.

[submitted] Sacc: Save All Correlations and Covariances

SACC (Save All Correlations and Covariances) is a format and reference library for general storage
of summary statistic measurements for the Dark Energy Science Collaboration (DESC) within and from the Large Synoptic Survey Telescope (LSST) project's Dark Energy Science Collaboration.

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