Results 1151-1200 of 1981 (1948 ASCL, 33 submitted)

[ascl:1803.004]
nanopipe: Calibration and data reduction pipeline for pulsar timing

nanopipe is a data reduction pipeline for calibration, RFI removal, and pulse time-of-arrival measurement from radio pulsar data. It was developed primarily for use by the NANOGrav project. nanopipe is written in Python, and depends on the PSRCHIVE (ascl:1105.014) library.

[ascl:1905.020]
NAPLES: Numerical Analysis of PLanetary EncounterS

NAPLES (Numerical Analysis of PLanetary EncounterS) performs batch propagations of close encounters in the three-body problem and computes the numerical error with respect to reference trajectories computed in quadruple precision. It uses the LSODAR integrator from ODEPACK (ascl:1905.021) and the equations of motion correspond to several regularized formulations.

[ascl:1102.006]
NBODY Codes: Numerical Simulations of Many-body (N-body) Gravitational Interactions

I review the development of direct N-body codes at Cambridge over nearly 40 years, highlighting the main stepping stones. The first code (NBODY1) was based on the simple concepts of a force polynomial combined with individual time steps, where numerical problems due to close encounters were avoided by a softened potential. Fortuitously, the elegant Kustaanheimo-Stiefel two-body regularization soon permitted small star clusters to be studied (NBODY3). Subsequent extensions to unperturbed three-body and four-body regularization proved beneficial in dealing with multiple interactions. Investigations of larger systems became possible with the Ahmad-Cohen neighbor scheme which was used more than 20 years ago for expanding universe models of 4000 galaxies (NBODY2). Combining the neighbor scheme with the regularization procedures enabled more realistic star clusters to be considered (NBODY5). After a period of simulations with no apparent technical progress, chain regularization replaced the treatment of compact subsystems (NBODY3, NBODY5). More recently, the Hermite integration method provided a major advance and has been implemented on the special-purpose HARP computers (NBODY4) together with an alternative version for workstations and supercomputers (NBODY6). These codes also include a variety of algorithms for stellar evolution based on fast lookup functions. The treatment of primordial binaries contains efficient procedures for chaotic two-body motion as well as tidal circularization, and special attention is paid to hierarchical systems and their stability. This family of N-body codes constitutes a powerful tool for dynamical simulations which is freely available to the astronomical community, and the massive effort owes much to collaborators.

[ascl:1502.010]
nbody6tt: Tidal tensors in N-body simulations

nbody6tt, based on Aarseth's nbody6 (ascl:1102.006) code, includes the treatment of complex galactic tides in a direct N-body simulation of a star cluster through the use of tidal tensors (tt) and offers two complementary methods. The first allows consideration of any kind of galaxy and orbit, thus offering versatility; this method cannot be used to study tidal debris, as it relies on the tidal approximation (linearization of the tidal force). The second method is not limited by this and does not require a galaxy simulation; the user defines a numerical function which takes position and time as arguments, and the galactic potential is returned. The space and time derivatives of the potential are used to (i) integrate the motion of the cluster on its orbit in the galaxy (starting from user-defined initial position and velocity vector), and (ii) compute the tidal acceleration on the stars.

[ascl:1904.027]
nbodykit: Massively parallel, large-scale structure toolkit

nbodykit provides algorithms for analyzing cosmological datasets from N-body simulations and large-scale structure surveys, and takes advantage of the abundance and availability of large-scale computing resources. The package provides a unified treatment of simulation and observational datasets by insulating algorithms from data containers, and reduces wall-clock time by scaling to thousands of cores. All algorithms are parallel and run with Message Passing Interface (MPI); the code is designed to be deployed on large super-computing facilities. nbodykit offers an interactive user interface that performs as well in a Jupyter notebook as on super-computing machines.

[ascl:1010.019]
NBSymple: A Double Parallel, Symplectic N-body Code Running on Graphic Processing Units

NBSymple is a numerical code which numerically integrates the equation of motions of N 'particles' interacting via Newtonian gravitation and move in an external galactic smooth field. The force evaluation on every particle is done by mean of direct summation of the contribution of all the other system's particle, avoiding truncation error. The time integration is done with second-order and sixth-order symplectic schemes. NBSymple has been parallelized twice, by mean of the Computer Unified Device Architecture to make the all-pair force evaluation as fast as possible on high-performance Graphic Processing Units NVIDIA TESLA C 1060, while the O(N) computations are distributed on various CPUs by mean of OpenMP Application Program. The code works both in single precision floating point arithmetics or in double precision. The use of single precision allows the use at best of the GPU performances but, of course, limits the precision of simulation in some critical situations. We find a good compromise in using a software reconstruction of double precision for those variables that are most critical for the overall precision of the code.

[ascl:1411.023]
NDF: Extensible N-dimensional Data Format Library

The Extensible N-Dimensional Data Format (NDF) stores bulk data in the form of N-dimensional arrays of numbers. It is typically used for storing spectra, images and similar datasets with higher dimensionality. The NDF format is based on the Hierarchical Data System (HDS) and is extensible; not only does it provide a comprehensive set of standard ancillary items to describe the data, it can also be extended indefinitely to handle additional user-defined information of any type. The NDF library is used to read and write files in the NDF format. It is distributed with the Starlink software (ascl:1110.012).

[ascl:1101.002]
NDSPMHD Smoothed Particle Magnetohydrodynamics Code

This paper presents an overview and introduction to Smoothed Particle Hydrodynamics and Magnetohydrodynamics in theory and in practice. Firstly, we give a basic grounding in the fundamentals of SPH, showing how the equations of motion and energy can be self-consistently derived from the density estimate. We then show how to interpret these equations using the basic SPH interpolation formulae and highlight the subtle difference in approach between SPH and other particle methods. In doing so, we also critique several `urban myths' regarding SPH, in particular the idea that one can simply increase the `neighbour number' more slowly than the total number of particles in order to obtain convergence. We also discuss the origin of numerical instabilities such as the pairing and tensile instabilities. Finally, we give practical advice on how to resolve three of the main issues with SPMHD: removing the tensile instability, formulating dissipative terms for MHD shocks and enforcing the divergence constraint on the particles, and we give the current status of developments in this area. Accompanying the paper is the first public release of the NDSPMHD SPH code, a 1, 2 and 3 dimensional code designed as a testbed for SPH/SPMHD algorithms that can be used to test many of the ideas and used to run all of the numerical examples contained in the paper.

[ascl:1411.013]
NEAT: Nebular Empirical Analysis Tool

NEAT is a fully automated code which carries out a complete analysis of lists of emission lines to estimate the amount of interstellar extinction, calculate representative temperatures and densities, compute ionic abundances from both collisionally excited lines and recombination lines, and finally to estimate total elemental abundances using an ionization correction scheme. NEAT uses a Monte Carlo technique to robustly propagate uncertainties from line flux measurements through to the derived abundances.

[ascl:1809.009]
NEBULA: Radiative transfer code of ionized nebulae at radio wavelengths

NEBULA performs the radiative transfer of the 3He+ hyperfine transition, radio recombination lines (RRLs), and free-free continuum emission through a model nebula. The model nebula is composed of only H and He within a three-dimension Cartesian grid with arbitrary density, temperature, and ionization structure. The 3He+ line is assumed to be in local thermodynamic equilibrium (LTE), but non-LTE effects and pressure broadening from electron impacts can be included for the RRLs. All spectra are broadened by thermal and microturbulent motions.

[ascl:1608.019]
NEBULAR: Spectrum synthesis for mixed hydrogen-helium gas in ionization equilibrium

NEBULAR synthesizes the spectrum of a mixed hydrogen helium gas in collisional ionization equilibrium. It is not a spectral fitting code, but it can be used to resample a model spectrum onto the wavelength grid of a real observation. It supports a wide range of temperatures and densities. NEBULAR includes free-free, free-bound, two-photon and line emission from HI, HeI and HeII. The code will either return the composite model spectrum, or, if desired, the unrescaled atomic emission coefficients. It is written in C++ and depends on the GNU Scientific Library (GSL).

[ascl:1010.004]
Needatool: A Needlet Analysis Tool for Cosmological Data Processing

NeedATool (Needlet Analysis Tool) performs data analysis based on needlets, a wavelet rendition powerful for the analysis of fields defined on a sphere. Needlets have been applied successfully to the treatment of astrophysical and cosmological observations, particularly to the analysis of cosmic microwave background (CMB) data. Wavelets have emerged as a useful tool for CMB data analysis, as they combine most of the advantages of both pixel space, where it is easier to deal with partial sky coverage and experimental noise, and the harmonic domain, in which beam treatment and comparison with theoretical predictions are more effective due in large part to their sharp localization.

[ascl:1010.051]
NEMO: A Stellar Dynamics Toolbox

NEMO is an extendible Stellar Dynamics Toolbox, following an Open-Source Software model. It has various programs to create, integrate, analyze and visualize N-body and SPH like systems, following the pipe and filter architecture. In addition there are various tools to operate on images, tables and orbits, including FITS files to export/import to/from other astronomical data reduction packages. A large growing fraction of NEMO has been contributed by a growing list of authors. The source code consist of a little over 4000 files and a little under 1,000,000 lines of code and documentation, mostly C, and some C++ and Fortran. NEMO development started in 1986 in Princeton (USA) by Barnes, Hut and Teuben. See also ZENO (ascl:1102.027) for the version that Barnes maintains.

[ascl:1307.017]
NEST: Noble Element Simulation Technique

Szydagis, M.; Barry, N.; Kazkaz, K.; Mock, J.; Stolp, D.; Sweany, M.; Tripathi, M.; Uvarov, S.; Walsh, N.; Woods, M.

NEST (Noble Element Simulation Technique) offers comprehensive, accurate, and precise simulation of the excitation, ionization, and corresponding scintillation and electroluminescence processes in liquid noble elements, useful for direct dark matter detectors, double beta decay searches, PET scans, and general radiation detection technology. Written in C++, NEST is an add-on module for the Geant4 simulation package that incorporates more detailed physics than is currently available into the simulation of scintillation. NEST is of particular use for low-energy nuclear recoils. All available liquid xenon data on nuclear recoils and electron recoils to date have been taken into consideration in arriving at the current models. NEST also handles the magnitude of the light and charge yields of nuclear recoils, including their electric field dependence, thereby shedding light on the possibility of detection or exclusion of a low-mass dark matter WIMP by liquid xenon detectors.

[ascl:1809.012]
nestcheck: Nested sampling calculations analysis

Nestcheck analyzes nested sampling runs and estimates numerical uncertainties on calculations using them. The package can load results from a number of nested sampling software packages, including MultiNest (ascl:1109.006), PolyChord (ascl:1502.011), dynesty (ascl:1809.013) and perfectns (ascl:1809.005), and offers the flexibility to add input functions for other nested sampling software packages. Nestcheck utilities include error analysis, diagnostic tests, and plots for nested sampling calculations.

[ascl:1010.085]
Network Tools for Astronomical Data Retrieval

The first step in a science project is the acquisition and understanding of the relevant data. The tools range from simple data transfer methods to more complex browser-emulating scripts. When integrated with a defined sample or catalog, these scripts provide seamless techniques to retrieve and store data of varying types. These tools can be used to leapfrog from website to website to acquire multi-wavelength datasets. This project demonstrates the capability to use multiple data websites, in conjunction, to perform the type of calculations once reserved for on-site datasets.

[ascl:1807.011]
nfield: Stochastic tool for QFT on inflationary backgrounds

nfield uses a stochastic formalism to compute the IR correlation functions of quantum fields during cosmic inflation in n-field dimensions. This is a necessary 1-loop resummation of the correlation functions to render them finite. The code supports the implementation of n-numbers of coupled test fields (energetically sub-dominant) as well as non-test fields.

[ascl:1903.013]
NFWdist: Density, distribution function, quantile function and random generation for the 3D NFW profile

Available in R and Python, the simple analytic scheme NFWdist performs highly efficient and exact sampling of the Navarro, Frenk & White (NFW) profile as a true probability distribution function, with the only variable being the concentration.

[ascl:1508.008]
NGMIX: Gaussian mixture models for 2D images

NGMIX implements Gaussian mixture models for 2D images. Both the PSF profile and the galaxy are modeled using mixtures of Gaussians. Convolutions are thus performed analytically, resulting in fast model generation as compared to methods that perform the convolution in Fourier space. For the galaxy model, NGMIX supports exponential disks and de Vaucouleurs and Sérsic profiles; these are implemented approximately as a sum of Gaussians using the fits from Hogg & Lang (2013). Additionally, any number of Gaussians can be fit, either completely free or constrained to be cocentric and co-elliptical.

[ascl:1608.016]
NICIL: Non-Ideal magnetohydrodynamics Coefficients and Ionisation Library

NICIL (Non-Ideal magnetohydrodynamics Coefficients and Ionisation Library) calculates the ionization values and the coefficients of the non-ideal magnetohydrodynamics terms of Ohmic resistivity, the Hall effect, and ambipolar diffusion. Written as a standalone Fortran90 module that can be implemented in existing codes, NICIL is fully parameterizable, allowing the user to choose which processes to include and decide the values of the free parameters. The module includes both cosmic ray and thermal ionization; the former includes two ion species and three species of dust grains (positively charged, negatively charged and neutral), and the latter includes five elements which can be doubly ionized.

[ascl:1508.002]
NICOLE: NLTE Stokes Synthesis/Inversion Code

NICOLE, written in Fortran 90, seeks the model atmosphere that provides the best fit to the Stokes profiles (in a least-squares sense) of an arbitrary number of simultaneously-observes spectral lines from solar/stellar atmospheres. The inversion core used for the development of NICOLE is the LORIEN engine (the Lovely Reusable Inversion ENgine), which combines the SVD technique with the Levenberg-Marquardt minimization method to solve the inverse problem.

[ascl:1302.013]
NIFTY: A versatile Python library for signal inference

Selig, Marco; Bell, Michael R.; Junklewitz, Henrik; Oppermann, Niels; Reinecke, Martin; Greiner, Maksim; Pachajoa, Carlos; Ensslin, Torsten A.

NIFTY (Numerical Information Field TheorY) is a versatile library enables the development of signal inference algorithms that operate regardless of the underlying spatial grid and its resolution. Its object-oriented framework is written in Python, although it accesses libraries written in Cython, C++, and C for efficiency. NIFTY offers a toolkit that abstracts discretized representations of continuous spaces, fields in these spaces, and operators acting on fields into classes. Thereby, the correct normalization of operations on fields is taken care of automatically. This allows for an abstract formulation and programming of inference algorithms, including those derived within information field theory. Thus, NIFTY permits rapid prototyping of algorithms in 1D and then the application of the developed code in higher-dimensional settings of real world problems. NIFTY operates on point sets, n-dimensional regular grids, spherical spaces, their harmonic counterparts, and product spaces constructed as combinations of those.

[ascl:1903.008]
NIFTy5: Numerical Information Field Theory v5

Arras, Philipp; Baltac, Mihai; Ensslin, Torsten A.; Frank, Philipp; Hutschenreuter, Sebastian; Knollmueller, Jakob; Leike, Reimar; Newrzella, Max-Niklas; Platz, Lukas; Reinecke, Martin; Stadler,
Julia

NIFTy (Numerical Information Field Theory) facilitates the construction of Bayesian field reconstruction algorithms for fields being defined over multidimensional domains. A NIFTy algorithm can be developed for 1D field inference and then be used in 2D or 3D, on the sphere, or on product spaces thereof. NIFTy5 is a complete redesign of the previous framework (ascl:1302.013), and requires only the specification of a probabilistic generative model for all involved fields and the data in order to be able to recover the former from the latter. This is achieved via Metric Gaussian Variational Inference, which also provides posterior samples for all unknown quantities jointly.

[ascl:1106.016]
Nightfall: Animated Views of Eclipsing Binary Stars

Nightfall is an astronomy application for fun, education, and science. It can produce animated views of eclipsing binary stars, calculate synthetic lightcurves and radial velocity curves, and eventually determine the best-fit model for a given set of observational data of an eclipsing binary star system.

Nightfall comes with a user guide and a set of observational data for several eclipsing binary star systems.

[ascl:1501.002]
NIGO: Numerical Integrator of Galactic Orbits

NIGO (Numerical Integrator of Galactic Orbits) predicts the orbital evolution of test particles moving within a fully-analytical gravitational potential generated by a multi-component galaxy. The code can simulate the orbits of stars in elliptical and disc galaxies, including non-axisymmetric components represented by a spiral pattern and/or rotating bar(s).

[ascl:1101.006]
NIRVANA: A Numerical Tool for Astrophysical Gas Dynamics

The NIRVANA code is capable of the simulation of multi-scale self-gravitational magnetohydrodynamics problems in three space dimensions employing the technique of adaptive mesh refinement. The building blocks of NIRVANA are (i) a fully conservative, divergence-free Godunov-type central scheme for the solution of the equations of magnetohydrodynamics; (ii) a block-structured mesh refinement algorithm which automatically adds and removes elementary grid blocks whenever necessary to achieve adequate resolution and; (iii) an adaptive mesh Poisson solver based on multigrid philosophy which incorporates the so-called elliptic matching condition to keep the gradient of the gravitational potential continous at fine/coarse mesh interfaces.

[ascl:1711.024]
NOD3: Single dish reduction software

NOD3 processes and analyzes maps from single-dish observations affected by scanning effects from clouds, receiver instabilities, or radio-frequency interference. Its “basket-weaving” tool combines orthogonally scanned maps into a final map that is almost free of scanning effects. A restoration tool for dual-beam observations reduces the noise by a factor of about two compared to the NOD2 version. Combining single-dish with interferometer data in the map plane ensures the full recovery of the total flux density.

[ascl:1305.013]
Non-Gaussian Realisations

Non-Gaussian Realisations provides code based on a spectral distortion/quantile transformation that generates a realization of a field on a cubic grid that has a specified probability distribution function and a specified power spectrum.

[ascl:1011.016]
Non-LTE Models and Theoretical Spectra of Accretion Disks in Active Galactic Nuclei. III. Integrated Spectra for Hydrogen-Helium Disks

We have constructed a grid of non-LTE disk models for a wide range of black hole mass and mass accretion rate, for several values of viscosity parameter alpha, and for two extreme values of the black hole spin: the maximum-rotation Kerr black hole, and the Schwarzschild (non-rotating) black hole. Our procedure calculates self-consistently the vertical structure of all disk annuli together with the radiation field, without any approximations imposed on the optical thickness of the disk, and without any ad hoc approximations to the behavior of the radiation intensity. The total spectrum of a disk is computed by summing the spectra of the individual annuli, taking into account the general relativistic transfer function. The grid covers nine values of the black hole mass between M = 1/8 and 32 billion solar masses with a two-fold increase of mass for each subsequent value; and eleven values of the mass accretion rate, each a power of 2 times 1 solar mass/year. The highest value of the accretion rate corresponds to 0.3 Eddington. We show the vertical structure of individual annuli within the set of accretion disk models, along with their local emergent flux, and discuss the internal physical self-consistency of the models. We then present the full disk-integrated spectra, and discuss a number of observationally interesting properties of the models, such as optical/ultraviolet colors, the behavior of the hydrogen Lyman limit region, polarization, and number of ionizing photons. Our calculations are far from definitive in terms of the input physics, but generally we find that our models exhibit rather red optical/UV colors. Flux discontinuities in the region of the hydrogen Lyman limit are only present in cool, low luminosity models, while hotter models exhibit blueshifted changes in spectral slope.

[ascl:1202.003]
NOVAS: Naval Observatory Vector Astrometry Software

Kaplan, George; Bartlett, Jennifer Lynn; Monet, Alice; Bangert, John; Puatua, Wendy; Harris, William; Fredericks, Amy; Barron, Eric G.; Barrett, Paul

NOVAS is an integrated package of subroutines and functions for computing various commonly needed quantities in positional astronomy. The package can provide, in one or two subroutine or function calls, the instantaneous coordinates of any star or planet in a variety of coordinate systems. At a lower level, NOVAS also supplies astrometric utility transformations, such as those for precession, nutation, aberration, parallax, and the gravitational deflection of light. The computations are accurate to better than one milliarcsecond. The NOVAS package is an easy-to-use facility that can be incorporated into data reduction programs, telescope control systems, and simulations. The U.S. parts of The Astronomical Almanac are prepared using NOVAS. Three editions of NOVAS are available: Fortran, C, and Python.

[ascl:1705.014]
NPTFit: Non-Poissonian Template Fitting

NPTFit is a specialized Python/Cython package that implements Non-Poissonian Template Fitting (NPTF), originally developed for characterizing populations of unresolved point sources. It offers fast evaluation of likelihoods for NPTF analyses and has an easy-to-use interface for performing non-Poissonian (as well as standard Poissonian) template fits using MultiNest (ascl:1109.006) or other inference tools. It allows inclusion of an arbitrary number of point source templates, with an arbitrary number of degrees of freedom in the modeled flux distribution, and has modules for analyzing and plotting the results of an NPTF.

[ascl:1804.015]
NR-code: Nonlinear reconstruction code

NR-code applies nonlinear reconstruction to the dark matter density field in redshift space and solves for the nonlinear mapping from the initial Lagrangian positions to the final redshift space positions; this reverses the large-scale bulk flows and improves the precision measurement of the baryon acoustic oscillations (BAO) scale.

[ascl:1807.025]
NRPy+: Code generator for Numerical Relativity

NRPy+ (Python-based Code generation for Numerical Relativity and Beyond) generates highly-optimized C code from complex tensorial expressions input in Einstein-like notation. NRPy+ uses SymPy as its computer algebra system backend. It is part of the NRPy+/SENR numerical relativity code package for solving Einstein's equations of general relativity to model compact objects at about 1/100 the cost in memory of more traditional, AMR-based numerical relativity codes, thus allowing desktop computers to be used for gravitational wave astrophysics.

[ascl:1609.009]
NSCool: Neutron star cooling code

NSCool is a 1D (i.e., spherically symmetric) neutron star cooling code written in Fortran 77. The package also contains a series of EOSs (equation of state) to build stars, a series of pre-built stars, and a TOV (Tolman- Oppenheimer-Volkoff) integrator to build stars from an EOS. It can also handle “strange stars” that have a huge density discontinuity between the quark matter and the covering thin baryonic crust. NSCool solves the heat transport and energy balance equations in whole GR, resulting in a time sequence of temperature profiles (and, in particular, a Teff - age curve). Several heating processes are included, and more can easily be incorporated. In particular it can evolve a star undergoing accretion with the resulting deep crustal heating, under a steady or time-variable accretion rate. NSCool is robust, very fast, and highly modular, making it easy to add new subroutines for new processes.

[ascl:1602.008]
NuCraft: Oscillation probabilities for atmospheric neutrinos calculator

NuCraft calculates oscillation probabilities for atmospheric neutrinos, taking into account matter effects and the Earth's atmosphere, and supports an arbitrary number of sterile neutrino flavors with easily configurable continuous Earth models. Continuous modeling of the Earth instead of the often-used approximation of four layers with constant density and consideration of the smearing of baseline lengths due to the variable neutrino production heights in Earth's atmosphere each lead to deviations of 10% or more for conventional neutrinos between 1 and 10 GeV.

[ascl:1904.030]
nudec_BSM: Neutrino Decoupling Beyond the Standard Model

nudec_BSM uses a simplified approach to solve for the neutrino decoupling, allowing one to capture the time dependence of the process while accounting for all possible interactions that can alter it.

[ascl:1601.014]
Nulike: Neutrino telescope likelihood tools

Nulike is software for including full event-level information in likelihood calculations for neutrino telescope searches for dark matter annihilation. It includes both angular and spectral information about neutrino events as well as their total number, and can be used for single models without reference to the rest of a parameter space.

[ascl:1408.013]
NumCosmo: Numerical Cosmology

NumCosmo is a free software C library whose main purposes are to test cosmological models using observational data and to provide a set of tools to perform cosmological calculations. The software implements three different probes: cosmic microwave background (CMB), supernovae type Ia (SNeIa) and large scale structure (LSS) information, such as baryonic acoustic oscillations (BAO) and galaxy cluster abundance. The code supports a joint analysis of these data and the parameter space can include cosmological and phenomenological parameters. NumCosmo matter power spectrum and CMB codes were written independent of other implementations such as CMBFAST (ascl:9909.004), CAMB (ascl:1102.026), etc.

The library structure simplifies the inclusion of non-standard cosmological models. Besides the functions related to cosmological quantities, this library also implements mathematical and statistical tools. The former were developed to enable the inclusion of other probes and/or theoretical models and to optimize the codes. The statistical framework comprises algorithms which define likelihood functions, minimization, Monte Carlo, Fisher Matrix and profile likelihood methods.

[ascl:1610.015]
NuPyCEE: NuGrid Python Chemical Evolution Environment

The NuGrid Python Chemical Evolution Environment (NuPyCEE) simulates the chemical enrichment and stellar feedback of stellar populations. It contains three modules. The Stellar Yields for Galactic Modeling Applications module (SYGMA) models the enrichment and feedback of simple stellar populations which can be included in hydrodynamic simulations and semi-analytic models of galaxies. It is the basic building block of the One-zone Model for the Evolution of GAlaxies (OMEGA, ascl:1806.018) module which models the chemical evolution of galaxies such as the Milky Way and its dwarf satellites. The STELLAB (STELLar ABundances) module provides a library of observed stellar abundances useful for comparing predictions of SYGMA and OMEGA.

[ascl:1712.006]
Nyx: Adaptive mesh, massively-parallel, cosmological simulation code

Nyx code solves equations of compressible hydrodynamics on an adaptive grid hierarchy coupled with an N-body treatment of dark matter. The gas dynamics in Nyx use a finite volume methodology on an adaptive set of 3-D Eulerian grids; dark matter is represented as discrete particles moving under the influence of gravity. Particles are evolved via a particle-mesh method, using Cloud-in-Cell deposition/interpolation scheme. Both baryonic and dark matter contribute to the gravitational field. In addition, Nyx includes physics for accurately modeling the intergalactic medium; in optically thin limits and assuming ionization equilibrium, the code calculates heating and cooling processes of the primordial-composition gas in an ionizing ultraviolet background radiation field.

[ascl:1408.019]
O_{2}scl: Object-oriented scientific computing library

O_{2}scl is an object-oriented library for scientific computing in C++ useful for solving, minimizing, differentiating, integrating, interpolating, optimizing, approximating, analyzing, fitting, and more. Many classes operate on generic function and vector types; it includes classes based on GSL and CERNLIB. O_{2}scl also contains code for computing the basic thermodynamic integrals for fermions and bosons, for generating almost all of the most common equations of state of nuclear and neutron star matter, and for solving the TOV equations. O_{2}scl can be used on Linux, Mac and Windows (Cygwin) platforms and has extensive documentation.

[ascl:1608.012]
OBERON: OBliquity and Energy balance Run on N-body systems

OBERON (OBliquity and Energy balance Run on N-body systems) models the climate of Earthlike planets under the effects of an arbitrary number and arrangement of other bodies, such as stars, planets and moons. The code, written in C++, simultaneously computes N body motions using a 4th order Hermite integrator, simulates climates using a 1D latitudinal energy balance model, and evolves the orbital spin of bodies using the equations of Laskar (1986a,b).

[ascl:1307.008]
Obit: Radio Astronomy Data Handling

Obit is a group of software packages for handling radio astronomy data, especially interferometric and single dish OTF imaging. Obit is primarily an environment in which new data processing algorithms can be developed and tested but which can also be used for production processing of a certain range of scientific problems. The package supports both prepackaged, compiled tasks and a python interface to the major class functionality to allow rapid prototyping using python scripts; it allows access to multiple disk--resident data formats, in particular access to either AIPS disk data or FITS files. Obit applications are interoperable with Classic AIPS and the ObitTalk python interface gives access to AIPS tasks as well as Obit libraries and tasks.

[ascl:1011.017]
Occultation and Microlensing

Occultation and microlensing are different limits of the same phenomena of one body passing in front of another body. We derive a general exact analytic expression which describes both microlensing and occultation in the case of spherical bodies with a source of uniform brightness and a non-relativistic foreground body. We also compute numerically the case of a source with quadratic limb-darkening. In the limit that the gravitational deflection angle is comparable to the angular size of the foreground body, both microlensing and occultation occur as the objects align. Such events may be used to constrain the size ratio of the lens and source stars, the limb-darkening coefficients of the source star, and the surface gravity of the lens star (if the lens and source distances are known). Application of these results to microlensing during transits in binaries and giant-star microlensing are discussed. These results unify the microlensing and occultation limits and should be useful for rapid model fitting of microlensing, eclipse, and "microccultation" events.

[submitted]
OCD: O'Connell Effect Detector using Push-Pull Learning

OCD (O'Connell Effect Detector using Push-Pull Learning) detects eclipsing binaries that demonstrate the O'Connell Effect. This time-domain signature extraction methodology uses a supporting supervised pattern detection algorithm. The methodology maps stellar variable observations (time-domain data) to a new representation known as Distribution Fields (DF), the properties of which enable efficient handling of issues such as irregular sampling and multiple values per time instance. Using this representation, the code applies a metric learning technique directly on the DF space capable of specifically identifying the stars of interest; the metric is tuned on a set of labeled eclipsing binary data from the Kepler survey, targeting particular systems exhibiting the O’Connell Effect. This code is useful for large-scale data volumes such as that expected from next generation telescopes such as LSST.

[ascl:1901.002]
OCFit: Python package for fitting of O-C diagrams

OCFit fits and analyzes O-C diagrams using Genetic Algorithms and Markov chain Monte Carlo methods. The MC method is used to determine a very good estimation of errors of the parameters. Unlike some other fitting routines, OCFit does not need any initial values of fitted parameters. An intuitive graphic user interface is provided for ease of fitting, and nine common models of periodic O-C changes are included.

[ascl:1812.018]
OctApps: Octave functions for continuous gravitational-wave data analysis

Wette, Karl; Prix, Reinhard; Keitel, David; Pitkin, Matthew; Dreissigacker, Christoph; Whelan, John T.; Leaci, Paola

The OctApps library provides various functions, written in Octave, for performing searches for the weak signatures of continuous gravitational waves from rapidly-rotating neutron stars amidst the instrumental noise of the LIGO and Virgo detectors.

[ascl:1010.048]
OCTGRAV: Sparse Octree Gravitational N-body Code on Graphics Processing Units

Octgrav is a very fast tree-code which runs on massively parallel Graphical Processing Units (GPU) with NVIDIA CUDA architecture. The algorithms are based on parallel-scan and sort methods. The tree-construction and calculation of multipole moments is carried out on the host CPU, while the force calculation which consists of tree walks and evaluation of interaction list is carried out on the GPU. In this way, a sustained performance of about 100GFLOP/s and data transfer rates of about 50GB/s is achieved. It takes about a second to compute forces on a million particles with an opening angle of $ heta approx 0.5$.

To test the performance and feasibility, we implemented the algorithms in CUDA in the form of a gravitational tree-code which completely runs on the GPU. The tree construction and traverse algorithms are portable to many-core devices which have support for CUDA or OpenCL programming languages. The gravitational tree-code outperforms tuned CPU code during the tree-construction and shows a performance improvement of more than a factor 20 overall, resulting in a processing rate of more than 2.8 million particles per second.

The code has a convenient user interface and is freely available for use.

[ascl:1905.021]
ODEPACK: Ordinary differential equation solver library

ODEPACK solves for the initial value problem for ordinary differential equation systems. It consists of nine solvers, a basic solver called LSODE and eight variants of it: LSODES, LSODA, LSODAR, LSODPK, LSODKR, LSODI, LSOIBT, and LSODIS. The collection is suitable for both stiff and nonstiff systems. It includes solvers for systems given in explicit form, dy/dt = f(t,y), and also solvers for systems given in linearly implicit form, A(t,y) dy/dt = g(t,y). The ODEPACK solvers are written in standard Fortran and there are separate double and single precision versions. Each solver consists of a main driver subroutine having the same name as the solver and some number of subordinate routines. For each solver, there is also a demonstration program, which solves one or two simple problems in a somewhat self-checking manner.

[ascl:1810.010]
ODTBX: Orbit Determination Toolbox

ODTBX (Orbit Determination Toolbox) provides orbit determination analysis, advanced mission simulation, and analysis for concept exploration, proposal, early design phase, and/or rapid design center environments. The core ODTBX functionality is realized through a set of estimation commands that incorporate Monte Carlo data simulation, linear covariance analysis, and measurement processing at a generic level; its functions and utilities are combined in a flexible architecture to allow modular development of navigation algorithms and simulations. ODTBX is written in Matlab and Java.

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