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[ascl:1408.013] NumCosmo: Numerical Cosmology

NumCosmo is a free software C library whose main purposes are to test cosmological models using observational data and to provide a set of tools to perform cosmological calculations. The software implements three different probes: cosmic microwave background (CMB), supernovae type Ia (SNeIa) and large scale structure (LSS) information, such as baryonic acoustic oscillations (BAO) and galaxy cluster abundance. The code supports a joint analysis of these data and the parameter space can include cosmological and phenomenological parameters. NumCosmo matter power spectrum and CMB codes were written independent of other implementations such as CMBFAST (ascl:9909.004), CAMB (ascl:1102.026), etc.

The library structure simplifies the inclusion of non-standard cosmological models. Besides the functions related to cosmological quantities, this library also implements mathematical and statistical tools. The former were developed to enable the inclusion of other probes and/or theoretical models and to optimize the codes. The statistical framework comprises algorithms which define likelihood functions, minimization, Monte Carlo, Fisher Matrix and profile likelihood methods.

[ascl:1408.012] LightcurveMC: An extensible lightcurve simulation program

LightcurveMC is a versatile and easily extended simulation suite for testing the performance of time series analysis tools under controlled conditions. It is designed to be highly modular, allowing new lightcurve types or new analysis tools to be introduced without excessive development overhead. The statistical tools are completely agnostic to how the lightcurve data is generated, and the lightcurve generators are completely agnostic to how the data will be analyzed. The use of fixed random seeds throughout guarantees that the program generates consistent results from run to run.

LightcurveMC can generate periodic light curves having a variety of shapes and stochastic light curves having a variety of correlation properties. It features two error models (Gaussian measurement and signal injection using a randomized sample of base light curves), testing of C1 shape statistic, periodograms, ΔmΔt plots, autocorrelation function plots, peak-finding plots, and Gaussian process regression. The code is written in C++ and R.

[ascl:1408.011] GALAPAGOS-C: Galaxy Analysis over Large Areas

GALAPAGOS-C is a C implementation of the IDL code GALAPAGOS (ascl:1203.002). It processes a complete set of survey images through automation of source detection via SExtractor (ascl:1010.064), postage stamp cutting, object mask preparation, sky background estimation and complex two-dimensional light profile Sérsic modelling via GALFIT (ascl:1104.010). GALAPAGOS-C uses MPI-parallelization, thus allowing quick processing of large data sets. The code can fit multiple Sérsic profiles to each galaxy, each representing distinct galaxy components (e.g. bulge, disc, bar), and optionally can fit asymmetric Fourier mode distortions.

[ascl:1408.010] VisiOmatic: Celestial image viewer

VisiOmatic is a web client for IIPImage (ascl:1408.009) and is used to visualize and navigate through large science images from remote locations. It requires STIFF (ascl:1110.006), is based on the Leaflet Javascript library, and works on both touch-based and mouse-based devices.

[ascl:1408.009] IIPImage: Large-image visualization

IIPImage is an advanced high-performance feature-rich image server system that enables online access to full resolution floating point (as well as other bit depth) images at terabyte scales. Paired with the VisiOmatic (ascl:1408.010) celestial image viewer, the system can comfortably handle gigapixel size images as well as advanced image features such as both 8, 16 and 32 bit depths, CIELAB colorimetric images and scientific imagery such as multispectral images. Streaming is tile-based, which enables viewing, navigating and zooming in real-time around gigapixel size images. Source images can be in either TIFF or JPEG2000 format. Whole images or regions within images can also be rapidly and dynamically resized and exported by the server from a single source image without the need to store multiple files in various sizes.

[ascl:1408.008] GALIC: Galaxy initial conditions construction

GalIC (GALaxy Initial Conditions) is an implementation of an iterative method to construct steady state composite halo-disk-bulge galaxy models with prescribed density distribution and velocity anisotropy that can be used as initial conditions for N-body simulations. The code is parallelized for distributed memory based on MPI. While running, GalIC produces "snapshot files" that can be used as initial conditions files. GalIC supports the three file formats ('type1' format, the slightly improved 'type2' format, and an HDF5 format) of the GADGET (ascl:0003.001) code for its output snapshot files.

[ascl:1408.007] Skycorr: Sky emission subtraction for observations without plain sky information

Skycorr is an instrument-independent sky subtraction code that uses physically motivated line group scaling in the reference sky spectrum by a fitting approach for an improved sky line removal in the object spectrum. Possible wavelength shifts between both spectra are corrected by fitting Chebyshev polynomials and advanced rebinning without resolution decrease. For the correction, the optimized sky line spectrum and the automatically separated sky continuum (without scaling) is subtracted from the input object spectrum. Tests show that Skycorr performs well (per cent level residuals) for data in different wavelength regimes and of different resolution, even in the cases of relatively long time lags between the object and the reference sky spectrum. Lower quality results are mainly restricted to wavelengths not dominated by airglow lines or pseudo continua by unresolved strong emission bands.

[ascl:1408.006] SPAM: Source Peeling and Atmospheric Modeling

SPAM is a extension to AIPS for reducing high-resolution, low-frequency radio interferometric observations. Direction-dependent ionospheric calibration and image-plane ripple suppression are among the features that help to make high-quality sub-GHz images. Data reductions are captured in well-tested Python scripts that execute AIPS tasks directly (mostly during initial data reduction steps), call high-level functions that make multiple AIPS or ParselTongue calls, and require few manual operations.

[ascl:1408.005] POET: Planetary Orbital Evolution due to Tides

POET (Planetary Orbital Evolution due to Tides) calculates the orbital evolution of a system consisting of a single star with a single planet in orbit under the influence of tides. The following effects are The evolutions of the semimajor axis of the orbit due to the tidal dissipation in the star and the angular momentum of the stellar convective envelope by the tidal coupling are taken into account. In addition, the evolution includes the transfer of angular momentum between the stellar convective and radiative zones, effect of the stellar evolution on the tidal dissipation efficiency, and stellar core and envelope spins and loss of stellar convective zone angular momentum to a magnetically launched wind. POET can be used out of the box, and can also be extended and modified.

[ascl:1408.004] HEAsoft: Unified Release of FTOOLS and XANADU

HEASOFT combines XANADU, high-level, multi-mission software for X-ray astronomical spectral, timing, and imaging data analysis tasks, and FTOOLS (ascl:9912.002), general and mission-specific software to manipulate FITS files, into one package. It also contains contains the NuSTAR subpackage of tasks, NuSTAR Data Analysis Software (NuSTARDAS). The source code for the software can be downloaded; precompiled executables for the most widely used computer platforms are also available for download. As an additional service, HEAsoft tasks can be directly from a web browser via WebHera.

[ascl:1408.003] PIA: ISOPHOT Interactive Analysis

ISOPHOT is one of the instruments on board the Infrared Space Observatory (ISO). ISOPHOT Interactive Analysis (PIA) is a scientific and calibration interactive data analysis tool for ISOPHOT data reduction. Written in IDL under Xwindows, PIA offers a full context sensitive graphical interface for retrieving, accessing and analyzing ISOPHOT data. It is available in two nearly identical versions; a general observers version omits the calibration sequences.

[ascl:1408.002] LIA: LWS Interactive Analysis

The Long Wavelength Spectrometer (LWS) was one of two complementary spectrometers on the Infrared Space Observatory (ISO). LIA (LWS Interactive Analysis) is used for processing data from the LWS. It provides access to the different processing steps, including visualization of intermediate products and interactive manipulation of the data at each stage.

[ascl:1408.001] Imfit: A Fast, Flexible Program for Astronomical Image Fitting

Imift is an open-source astronomical image-fitting program specialized for galaxies but potentially useful for other sources, which is fast, flexible, and highly extensible. Its object-oriented design allows new types of image components (2D surface-brightness functions) to be easily written and added to the program. Image functions provided with Imfit include Sersic, exponential, and Gaussian galaxy decompositions along with Core-Sersic and broken-exponential profiles, elliptical rings, and three components that perform line-of-sight integration through 3D luminosity-density models of disks and rings seen at arbitrary inclinations.

Available minimization algorithms include Levenberg-Marquardt, Nelder-Mead simplex, and Differential Evolution, allowing trade-offs between speed and decreased sensitivity to local minima in the fit landscape. Minimization can be done using the standard chi^2 statistic (using either data or model values to estimate per-pixel Gaussian errors, or else user-supplied error images) or the Cash statistic; the latter is particularly appropriate for cases of Poisson data in the low-count regime.

The C++ source code for Imfit is available under the GNU Public License.

[ascl:1407.020] Halogen: Multimass spherical structure models for N-body simulations

Halogen, written in C, generates multimass spherically symmetric initial conditions for N-body simulations. A large family of radial density profiles is supported. The initial conditions are sampled from the full distribution function.

[ascl:1407.019] EZ_Ages: Stellar population age calculator

EZ_Ages is an IDL code package that computes the mean, light-weighted stellar population age, [Fe/H], and abundance enhancements [Mg/Fe], [C/Fe], [N/Fe], and [Ca/Fe] for unresolved stellar populations. This is accomplished by comparing Lick index line strengths between the data and the stellar population models of Schiavon (2007), using a method described in Graves & Schiavon (2008). The algorithm uses the inversion of index-index model grids to determine ages and abundances, and exploits the sensitivities of the various Lick indices to measure Mg, C, N, and Ca enhancements over their solar abundances with respect to Fe.

[ascl:1407.018] AstroML: Machine learning and data mining in astronomy

Written in Python, AstroML is a library of statistical and machine learning routines for analyzing astronomical data in python, loaders for several open astronomical datasets, and a large suite of examples of analyzing and visualizing astronomical datasets. An optional companion library, astroML_addons, is available; it requires a C compiler and contains faster and more efficient implementations of certain algorithms in compiled code.

[ascl:1407.017] e-MERLIN data reduction pipeline

Written in Python and utilizing ParselTongue (ascl:1208.020) to interface with AIPS (ascl:9911.003), the e-MERLIN data reduction pipeline processes, calibrates and images data from the UK's radio interferometric array (Multi-Element Remote-Linked Interferometer Network). Driven by a plain text input file, the pipeline is modular and can be run in stages. The software includes options to load raw data, average in time and/or frequency, flag known sources of interference, flag more comprehensively with SERPent (ascl:1312.001), carry out some or all of the calibration procedures (including self-calibration), and image in either normal or wide-field mode. It also optionally produces a number of useful diagnostic plots at various stages so data quality can be assessed.

[ascl:1407.016] Brut: Automatic bubble classifier

Brut, written in Python, identifies bubbles in infrared images of the Galactic midplane; it uses a database of known bubbles from the Milky Way Project and Spitzer images to build an automatic bubble classifier. The classifier is based on the Random Forest algorithm, and uses the WiseRF implementation of this algorithm.

[ascl:1407.015] BayesFlare: Bayesian method for detecting stellar flares

BayesFlare identifies flaring events in light curves released by the Kepler mission; it identifies even weak events by making use of the flare signal shape. The package contains functions to perform Bayesian hypothesis testing comparing the probability of light curves containing flares to that of them containing noise (or non-flare-like) artifacts. BayesFlare includes functions in its amplitude-marginalizer suite to account for underlying sinusoidal variations in light curve data; it includes such variations in the signal model, and then analytically marginalizes over them.

[ascl:1407.014] VIDE: The Void IDentification and Examination toolkit

The Void IDentification and Examination toolkit (VIDE) identifies voids using a modified version of the parameter-free void finder ZOBOV (ascl:1304.005); a Voronoi tessellation of the tracer particles is used to estimate the density field followed by a watershed algorithm to group Voronoi cells into zones and subsequently voids. Output is a summary of void properties in plain ASCII; a Python API is provided for analysis tasks, including loading and manipulating void catalogs and particle members, filtering, plotting, computing clustering statistics, stacking, comparing catalogs, and fitting density profiles.

[ascl:1407.013] VStar: Variable star data visualization and analysis tool

VStar is a multi-platform, easy-to-use variable star data visualization and analysis tool. Data for a star can be read from the AAVSO (American Association of Variable Star Observers) database or from CSV and TSV files. VStar displays light curves and phase plots, can produce a mean curve, and analyzes time-frequency with Weighted Wavelet Z-Transform. It offers tools for period analysis, filtering, and other functions.

[ascl:1407.012] PINGSoft2: Integral Field Spectroscopy Software

PINGSoft2 visualizes, manipulates and analyzes integral field spectroscopy (IFS) data based on either 3D cubes or Raw Stacked Spectra (RSS) format. Any IFS data can be adapted to work with PINGSoft2, regardless of the original data format and the size/shape of the spaxel. Written in IDL, PINGSoft2 is optimized for fast visualization rendering; it also includes various routines useful for generic astronomy and spectroscopy tasks.

[ascl:1407.011] kungifu: Calibration and reduction of fiber-fed IFU astronomical spectroscopy

kungifu is a set of IDL software routines designed for the calibration and reduction of fiber-fed integral-field unit (IFU) astronomical spectroscopy. These routines can perform optimal extraction of IFU data and allow relative and absolute wavelength calibration to within a few hundredths of a pixel (for unbinned data) across 1200-2000 fibers. kungifu does nearly Poisson-limited sky subtraction, even in the I band, and can rebin in wavelength. The Princeton IDLUTILS and IDLSPEC2D packages must be installed for kungifu to run.

[ascl:1407.010] CLE: Coronal line synthesis

CLE, written in Fortran 77, synthesizes Stokes profiles of forbidden lines such as Fe XIII 1074.7nm, formed in magnetic dipole transitions under coronal conditions. The lines are assumed to be optically thin, excited by (anisotropic) photospheric radiation and thermal particle collisions.

[ascl:1407.009] Period04: Statistical analysis of large astronomical time series

Period04 statistically analyzes large astronomical time series containing gaps. It calculates formal uncertainties, can extract the individual frequencies from the multiperiodic content of time series, and provides a flexible interface to perform multiple-frequency fits with a combination of least-squares fitting and the discrete Fourier transform algorithm. Period04, written in Java/C++, supports the SAMP communication protocol to provide interoperability with other applications of the Virtual Observatory. It is a reworked and extended version of Period98 (Sperl 1998) and PERIOD/PERDET (Breger 1990).

[ascl:1407.008] Exopop: Exoplanet population inference

Exopop is a general hierarchical probabilistic framework for making justified inferences about the population of exoplanets. Written in python, it requires that the occurrence rate density be a smooth function of period and radius (employing a Gaussian process) and takes survey completeness and observational uncertainties into account. Exopop produces more accurate estimates of the whole population than standard procedures based on weighting by inverse detection efficiency.

[ascl:1407.007] ASTRORAY: General relativistic polarized radiative transfer code

ASTRORAY employs a method of ray tracing and performs polarized radiative transfer of (cyclo-)synchrotron radiation. The radiative transfer is conducted in curved space-time near rotating black holes described by Kerr-Schild metric. Three-dimensional general relativistic magneto hydrodynamic (3D GRMHD) simulations, in particular performed with variations of the HARM code, serve as an input to ASTRORAY. The code has been applied to reproduce the sub-mm synchrotron bump in the spectrum of Sgr A*, and to test the detectability of quasi-periodic oscillations in its light curve. ASTRORAY can be readily applied to model radio/sub-mm polarized spectra of jets and cores of other low-luminosity active galactic nuclei. For example, ASTRORAY is uniquely suitable to self-consistently model Faraday rotation measure and circular polarization fraction in jets.

[ascl:1407.006] SAMI: Sydney-AAO Multi-object Integral field spectrograph pipeline

The SAMI (Sydney-AAO Multi-object Integral field spectrograph) pipeline reduces data from the Sydney-AAO Multi-object Integral field spectrograph (SAMI) for the SAMI Galaxy Survey. The python code organizes SAMI data and, along with the AAO 2dfdr package, carries out all steps in the data reduction, from raw data to fully calibrated datacubes. The principal steps are: data management, use of 2dfdr to produce row-stacked spectra, flux calibration, correction for telluric absorption, removal of atmospheric dispersion, alignment of dithered exposures, and drizzling onto a regular output grid. Variance and covariance information is tracked throughout the pipeline. Some quality control routines are also included.

[ascl:1407.005] MATLAB package for astronomy and astrophysics

The MATLAB package for astronomy and astrophysics is a collection of software tools and modular functions for astronomy and astrophysics, written in the MATLAB environment. It includes over 700 MATLAB functions and a few tens of data files and astronomical catalogs. The scripts cover a wide range of subjects including: astronomical image processing, ds9 control, astronomical spectra, optics and diffraction phenomena, catalog retrieval and searches, celestial maps and projections, Solar System ephemerides, planar and spherical geometry, time and coordinates conversion and manipulation, cosmology, gravitational lensing, function fitting, general utilities, plotting utilities, statistics, and time series analysis.

[ascl:1407.004] MCMAC: Monte Carlo Merger Analysis Code

Monte Carlo Merger Analysis Code (MCMAC) aids in the study of merging clusters. It takes observed priors on each subcluster's mass, radial velocity, and projected separation, draws randomly from those priors, and uses them in a analytic model to get posterior PDF's for merger dynamic properties of interest (e.g. collision velocity, time since collision).

[ascl:1407.003] SPECDRE: Spectroscopy Data Reduction

Specdre performs spectroscopy data reduction and analysis. General features of the package include data cube manipulation, arc line calibration, resampling and spectral fitting. Particular care is taken with error propagation, including tracking covariance. SPECDRE is distributed as part of the Starlink software collection (ascl:1110.012).

[ascl:1407.002] TWODSPEC: Long-slit and optical fiber array spectra extensions for FIGARO

TWODSPEC offers programs for the reduction and analysis of long-slit and optical fiber array spectra, implemented as extensions to the FIGARO package (ascl:1203.013). The software are currently distributed as part of the Starlink software collection (ascl:1110.012). These programs are designed to do as much as possible for the user, to assist quick reduction and analysis of data; for example, LONGSLIT can fit multiple Gaussians to line profiles in batch and decides how many components to fit.

[ascl:1407.001] The Starfish Diagram: Statistical visualization tool

The Starfish Diagram is a statistical visualization tool that simultaneously displays the properties of an individual and its parent sample through a series of histograms. The code is useful for large datasets for which one needs to understand the standing or significance of a single entry.

[ascl:1406.020] STARMAN: Stellar photometry and image/table handling

STARMAN is a stellar photometry package designed for the reduction of data from imaging systems. Its main components are crowded-field photometry programs, aperture photometry programs, a star finding program, and a CCD reduction program.

Image and table handling are served by a large number of programs which have a general use in photometry and other types of work. The package is a coherent whole, for use in the entire process of stellar photometry from raw images to the final standard-system magnitudes and their plotting as color-magnitude and color-color diagrams. It was distributed as part of the Starlink software collection (ascl:1110.012).

[ascl:1406.019] JCMTDR: Applications for reducing JCMT continuum data in GSD format

JCMTDR reduces continuum on-the-fly mapping data obtained with UKT14 or the heterodyne instruments using the IFD on the James Clerk Maxwell Telescope. This program reduces archive data and heterodyne beam maps and was distributed as part of the Starlink software collection (ascl:1110.012).

[ascl:1406.018] GAUSSCLUMPS: Gaussian-shaped clumping from a spectral map

GAUSSCLUMPS decomposes a spectral map into Gaussian-shape clumps. The clump-finding algorithm decomposes a spectral data cube by iteratively removing 3-D Gaussians as representative clumps. GAUSSCLUMPS was originally a separate code distribution but is now a contributed package in GILDAS (ascl:1305.010). A reimplementation can also be found in CUPID (ascl:1311.007).

[ascl:1406.017] COCO: Conversion of Celestial Coordinates

The COCO program converts star coordinates from one system to another. Both the improved IAU system, post-1976, and the old pre-1976 system are supported. COCO can perform accurate transformations between multiple coordinate systems. COCO’s user-interface is spartan but efficient and the program offers control over report resolution. All input is free-format, and defaults are provided where this is meaningful. COCO uses SLALIB (ascl:1403.025) and is distributed as part of the Starlink software collection (ascl:1110.012).

[ascl:1406.016] IUEDR: IUE Data Reduction package

IUEDR reduces IUE data. It addresses the problem of working from the IUE Guest Observer tape or disk file through to a calibrated spectrum that can be used in scientific analysis and is a complete system for IUE data reduction. IUEDR was distributed as part of the Starlink software collection (ascl:1110.012).

[ascl:1406.015] IRCAMDR: IRCAM3 Data Reduction Software

The UKIRT IRCAM3 data reduction and analysis software package, IRCAMDR (formerly ircam_clred) analyzes and displays any 2D data image stored in the standard Starlink (ascl:1110.012) NDF data format. It reduces and analyzes IRCAM1/2 data images of 62x58 pixels and IRCAM3 images of 256x256 size. Most of the applications will work on NDF images of any physical (pixel) dimensions, for example, 1024x1024 CCD images can be processed.

[ascl:1406.014] IRAS90: IRAS Data Processing

IRAS90 is a suite of programs for processing IRAS data. It takes advantage of Starlink's (ascl:1110.012) ADAM environment, which provides multi-platform availability of both data and the programs to process it, and the user friendly interface of the parameter entry system. The suite can determine positions in astrometric coordinates, draw grids, and offers other functions for standard astronomical measurement and standard projections.

[ascl:1406.013] CGS4DR: Automated reduction of data from CGS4

CGS4DR is data reduction software for the CGS4 instrument at UKIRT. The software can be used offline to reprocess CGS4 data. CGS4DR allows a wide variety of data reduction configurations, and can interlace oversampled data frames; reduce known bias, dark, flat, arc, object and sky frames; remove the sky, residual sky OH-lines (λ < 2.3 μm) and thermal emission (λ ≥ 2.3 μm) from data; and add data into groups for improved signal-to-noise. It can also extract and de-ripple a spectrum and offers a variety of ways to plot data, in addition to other useful features. CGS4DR is distributed as part of the Starlink software collection (ascl:1110.012).

[ascl:1406.012] POLMAP: Interactive data analysis package for linear spectropolarimetry

POLMAP provides routines for displaying and analyzing spectropolarimetry data that are not available in the complementary TSP package. Commands are provided to read and write TSP (ascl:1406.011) polarization spectrum format files from within POLMAP. This code is distributed as part of the Starlink software collection (ascl:1110.012).

[ascl:1406.011] TSP: Time-Series/Polarimetry Package

TSP is an astronomical data reduction package that handles time series data and polarimetric data from a variety of different instruments, and is distributed as part of the Starlink software collection (ascl:1110.012).

[ascl:1406.010] MATCH: A program for matching star lists

MATCH matches up items in two different lists, which can have two different systems of coordinates. The program allows the two sets of coordinates to be related by a linear, quadratic, or cubic transformation. MATCH was designed and written to work on lists of stars and other astronomical objects but can be applied to other types of data. In order to match two lists of N points, the main algorithm calls for O(N^6) operations; though not the most efficient choice, it does allow for arbitrary translation, rotation, and scaling.

[ascl:1406.009] VADER: Viscous Accretion Disk Evolution Resource

VADER is a flexible, general code that simulates the time evolution of thin axisymmetric accretion disks in time-steady potentials. VADER handles arbitrary viscosities, equations of state, boundary conditions, and source and sink terms for both mass and energy.

[ascl:1406.008] ASTROM: Basic astrometry program

ASTROM performs "plate reductions" by taking user-provided star positions and the (x,y) coordinates of the corresponding star images and establishes the relationship between (x,y) and (ra,dec), thus enabling the coordinates of unknown stars to be determined. ASTROM is distributed with the Starlink software (ascl:1110.012) and uses SLALIB (ascl:1403.025).

[ascl:1406.007] RV: Radial Components of Observer's Velocity

The RV program produces a report listing the components, in a given direction, of the observer's velocity on a given date. This allows an observed radial velocity to be referred to an appropriate standard of rest -- typically either the Sun or an LSR.

As a secondary function, RV computes light time components to the Sun, thus allowing the times of phenomena observed from a terrestrial observatory to be referred to a heliocentric frame of reference. n.b. It will of course, in addition, be necessary to express the observations in the appropriate timescale as well as applying light time corrections. In particular, it is likely that an observed UTC will need to be converted to TDB as well as being corrected to the Sun.)

RV is distributed with the Starlink software collection (ascl:1110.012) and uses SLALIB (ascl:1403.025).

[ascl:1406.006] FROG: Time-series analysis

FROG performs time series analysis and display. It provides a simple user interface for astronomers wanting to do time-domain astrophysics but still offers the powerful features found in packages such as PERIOD (ascl:1406.005). FROG includes a number of tools for manipulation of time series. Among other things, the user can combine individual time series, detrend series (multiple methods) and perform basic arithmetic functions. The data can also be exported directly into the TOPCAT (ascl:1101.010) application for further manipulation if needed.

[ascl:1406.005] PERIOD: Time-series analysis package

PERIOD searches for periodicities in data. It is distributed within the Starlink software collection (ascl:1110.012).

[ascl:1406.004] Autoastrom: Autoastrometry for Mosaics

Autoastrom performs automated astrometric corrections on an astronomical image by automatically detecting objects in the frame, retrieving a reference catalogue, cross correlating the catalog with CCDPACK (ascl:1403.021) or MATCH, and using the ASTROM (ascl:1406.008) application to calculate a correction. It is distributed as part of the Starlink software collection (ascl:1110.012).

[ascl:1406.003] CoREAS: CORSIKA-based Radio Emission from Air Showers simulator

CoREAS is a Monte Carlo code for the simulation of radio emission from extensive air showers. It implements the endpoint formalism for the calculation of electromagnetic radiation directly in CORSIKA (ascl:1202.006). As such, it is parameter-free, makes no assumptions on the emission mechanism for the radio signals, and takes into account the complete complexity of the electron and positron distributions as simulated by CORSIKA.

[ascl:1406.002] PAMELA: Optimal extraction code for long-slit CCD spectroscopy

PAMELA is an implementation of the optimal extraction algorithm for long-slit CCD spectroscopy and is well suited for time-series spectroscopy. It properly implements the optimal extraction algorithm for curved spectra, including on-the-fly cosmic ray rejection as well as proper calculation and propagation of the errors. The software is distributed as part of the Starlink software collection (ascl:1110.012).

[ascl:1406.001] ASURV: Astronomical SURVival Statistics

ASURV (Astronomical SURVival Statistics) provides astronomy survival analysis for right- and left-censored data including the maximum-likelihood Kaplan-Meier estimator and several univariate two-sample tests, bivariate correlation measures, and linear regressions. ASURV is written in FORTRAN 77, and is stand-alone and does not call any specialized libraries.

[ascl:1405.018] ECHOMOP: Echelle data reduction package

ECHOMOP extracts spectra from 2-D data frames. These data can be single-order spectra or multi-order echelle spectra. A substantial degree of automation is provided, particularly in the traditionally manual functions for cosmic-ray detection and wavelength calibration; manual overrides are available. Features include robust and flexible order tracing, optimal extraction, support for variance arrays, and 2-D distortion fitting and extraction. ECHOMOP is distributed as part of the Starlink software collection (ascl:1110.012).

[ascl:1405.017] ESP: Extended Surface Photometry

ESP (Extended Surface Photometry) determines the photometric properties of galaxies and other extended objects. It has applications that detect flatfielding faults, remove cosmic rays, median filter images, determine image statistics and local background values, perform galaxy profiling, fit 2-D Gaussian profiles to galaxies, generate pie slice cross-sections of galaxies, and display profiling results. It is distributed as part of the Starlink software collection (ascl:1110.012).

[ascl:1405.016] DIPSO: Spectrum analysis code

DIPSO plots spectroscopic data rapidly and combines analysis and high-quality graphical output in a simple command-line driven interactive environment. It can be used, for example, to fit emission lines, measure equivalent widths and fluxes, do Fourier analysis, and fit models to spectra. A macro facility allows convenient execution of regularly used sequences of commands, and a simple Fortran interface permits "personal" software to be integrated with the program. DIPSO is part of the Starlink software collection (ascl:1110.012).

[ascl:1405.015] CURSA: Catalog and Table Manipulation Applications

The CURSA package manipulates astronomical catalogs and similar tabular datasets. It provides facilities for browsing or examining catalogs; selecting subsets from a catalog; sorting and copying catalogs; pairing two catalogs; converting catalog coordinates between some celestial coordinate systems; and plotting finding charts and photometric calibration. It can also extract subsets from a catalog in a format suitable for plotting using other Starlink packages such as PONGO. CURSA can access catalogs held in the popular FITS table format, the Tab-Separated Table (TST) format or the Small Text List (STL) format. Catalogs in the STL and TST formats are simple ASCII text files. CURSA also includes some facilities for accessing remote on-line catalogs via the Internet. It is part of the Starlink software collection (ascl:1110.012).

[ascl:1405.014] POLPACK: Imaging polarimetry reduction package

POLPACK maps the linear or circular polarization of extended astronomical objects, either in a single waveband, or in multiple wavebands (spectropolarimetry). Data from both single and dual beam polarimeters can be processed. It is part of the Starlink software collection (ascl:1110.012).

[ascl:1405.013] PHOTOM: Photometry of digitized images

PHOTOM performs photometry of digitized images. It has two basic modes of operation: using an interactive display to specify the positions for the measurements, or obtaining those positions from a file. In both modes of operation PHOTOM performs photometry using either the traditional aperture method or via optimal extraction. When using the traditional aperture extraction method the target aperture can be circular or elliptical and its size and shape can be varied interactively on the display, or by entering values from the keyboard. Both methods allow the background sky level to be either sampled interactively by the manual positioning of an aperture, or automatically from an annulus surrounding the target object. PHOTOM is the photometry backend for the GAIA tool (ascl:1403.024) and is part of the Starlink software collection (ascl:1110.012).

[ascl:1405.012] PISA: Position Intensity and Shape Analysis

PISA (Position, Intensity and Shape Analysis) routines deal with the location and parameterization of objects on an image frame. The core of this package is the routine PISAFIND which performs image analysis on a 2-dimensional data frame. The program searches the data array for objects that have a minimum number of connected pixels above a given threshold and extracts the image parameters (position, intensity, shape) for each object. The image parameters can be determined using thresholding techniques or an analytical stellar profile can be used to fit the objects. In crowded regions deblending of overlapping sources can be performed. PISA is distributed as part of the Starlink software collection (ascl:1110.012).

[ascl:1405.011] DATACUBE: A datacube manipulation package

DATACUBE is a command-line package for manipulating and visualizing data cubes. It was designed for integral field spectroscopy but has been extended to be a generic data cube tool, used in particular for sub-millimeter data cubes from the James Clerk Maxwell Telescope. It is part of the Starlink software collection (ascl:1110.012).

[ascl:1405.010] FLUXES: Position and flux density of planets

FLUXES calculates approximate topocentric positions of the planets and also integrated flux densities of five of them at several wavelengths. These provide calibration information at the effective frequencies and beam-sizes employed by the UKT14, SCUBA and SCUBA-2 receivers on the JCMT telescope based on Mauna Kea, Hawaii. FLUXES is part of the bundle that comprises the Starlink multi-purpose astronomy software package (ascl:1110.012).

[ascl:1405.009] ATV: Image display tool

ATV displays and analyses astronomical images using the IDL image-processing language. It allows interactive control of the image scaling, color table, color stretch, and zoom, with support for world coordinate systems. It also does point-and-click aperture photometry, simple spectral extractions, and can produce publication-quality postscript output images.

[ascl:1405.008] TRIPP: Time Resolved Imaging Photometry Package

Written in IDL, TRIPP performs CCD time series reduction and analysis. It provides an on-line check of the incoming frames, performs relative aperture photometry and provides a set of time series tools, such as calculation of periodograms including false alarm probability determination, epoc folding, sinus fitting, and light curve simulations.

[ascl:1405.007] FORWARD: Forward modeling of coronal observables

FORWARD forward models various coronal observables and can access and compare existing data. Given a coronal model, it can produce many different synthetic observables (including Stokes polarimetry), as well as plots of model plasma properties (density, magnetic field, etc.). It uses the CHIANTI database (ascl:9911.004) and CLE polarimetry synthesis code, works with numerical model datacubes, interfaces with the PFSS module of SolarSoft (ascl:1208.013), includes several analytic models, and connects to the Virtual Solar Observatory for downloading data in a format directly comparable to model predictions.

[ascl:1405.006] PROPER: Optical propagation routines

PROPER simulates the propagation of light through an optical system using Fourier transform algorithms (Fresnel, angular spectrum methods). Distributed as IDL source code, it includes routines to create complex apertures, aberrated wavefronts, and deformable mirrors. It is especially useful for the simulation of high contrast imaging telescopes (extrasolar planet imagers like TPF).

[ascl:1405.005] HIIPHOT: Automated Photometry of H II Regions

HIIPHOT enables accurate photometric characterization of H II regions while permitting genuine adaptivity to irregular source morphology. It makes a first guess at the shapes of all sources through object recognition techniques; it then allows for departure from such idealized "seeds" through an iterative growing procedure and derives photometric corrections for spatially coincident diffuse emission from a low-order surface fit to the background after exclusion of all detected sources.

[ascl:1405.004] Defringeflat: Fringe pattern removal

The IDL package Defringeflat identifies and removes fringe patterns from images such as spectrograph flat fields. It uses a wavelet transform to calculate the frequency spectrum in a region around each point of a one-dimensional array. The wavelet transform amplitude is reconstructed from (smoothed) parameters obtaining the fringe's wavelet transform, after which an inverse wavelet transform is performed to obtain the computed fringe pattern which is then removed from the flat.

[ascl:1405.003] The Hammer: An IDL Spectral Typing Suite

The Hammer can classify spectra in a variety of formats with targets spanning the MK spectral sequence. It processes a list of input spectra by automatically estimating each object's spectral type and measuring activity and metallicity tracers in late type stars. Once automatic processing is complete, an interactive interface allows the user to manually tweak the final assigned spectral type through visual comparison with a set of templates.

[ascl:1405.002] TelFit: Fitting the telluric absorption spectrum

TelFit calculates the best-fit telluric absorption spectrum in high-resolution optical and near-IR spectra. The best-fit model can then be divided out to remove the telluric contamination. Written in Python, TelFit is essentially a wrapper to LBLRTM, the Line-By-Line Radiative Transfer Model, and simplifies the process of generating a telluric model.

[ascl:1405.001] LBLRTM: Line-By-Line Radiative Transfer Model

LBLRTM (Line-By-Line Radiative Transfer Model) is an accurate line-by-line model that is efficient and highly flexible. LBLRTM attributes provide spectral radiance calculations with accuracies consistent with the measurements against which they are validated and with computational times that greatly facilitate the application of the line-by-line approach to current radiative transfer applications. LBLRTM has been extensively validated against atmospheric radiance spectra from the ultra-violet to the sub-millimeter.

LBLRTM's heritage is in FASCODE [Clough et al., 1981, 1992].

[ascl:1404.017] Spextool: Spectral EXtraction tool

Spextool (Spectral EXtraction tool) is an IDL-based data reduction package for SpeX, a medium resolution near-infrared spectrograph on the NASA IRTF. It performs all of the steps necessary to produce spectra ready for analysis and publication including non-linearity corrections, flat fielding, wavelength calibration, telluric correction, flux calibration, and order merging.

[ascl:1404.016] AST: World Coordinate Systems in Astronomy

The AST library provides a comprehensive range of facilities for attaching world coordinate systems to astronomical data, for retrieving and interpreting that information in a variety of formats, including FITS-WCS, and for generating graphical output based on it. Core projection algorithms are provided by WCSLIB (ascl:1108.003) and astrometry is provided by the PAL (ascl:1606.002) and SOFA (ascl:1403.026) libraries. AST bindings are available in Python (pyast), Java (JNIAST) and Perl (Starlink::AST). AST is used as the plotting and astrometry library in DS9 and GAIA, and is distributed separately and as part of the Starlink software collection.

[ascl:1404.015] TTVFast: Transit timing inversion

TTVFast efficiently calculates transit times for n-planet systems and the corresponding radial velocities. The code uses a symplectic integrator with a Keplerian interpolator for the calculation of transit times (Nesvorny et al. 2013); it is available in both C and Fortran.

[ascl:1404.014] SpecPro: Astronomical spectra viewer and analyzer

SpecPro is an interactive program for viewing and analyzing spectra, particularly in the context of modern imaging surveys. In addition to displaying the 1D and 2D spectrum, SpecPro can simultaneously display available stamp images as well as the spectral energy distribution of a source. This extra information can help significantly in assessing a spectrum.

[ascl:1404.013] WFC3UV_GC: WFC3 UVIS geometric-distortion correction

WFC3UV_GC is an improved geometric-distortion solution for the Hubble Space Telescope UVIS channel of Wide Field Camera 3 for ten broad-band filters. The solution is made up of three parts:

  1. a 3rd-order polynomial to deal with the general optical distortion
  2. a table of residuals that accounts for both chip-related anomalies and fine-structure introduced by the filter
  3. a linear transformation to put the two chips into a convenient master frame

[ascl:1404.012] RegPT: Regularized cosmological power spectrum

RegPT computes the power spectrum in flat wCDM class models based on the RegPT treatment when provided with either of transfer function or matter power spectrum. It then gives the multiple-redshift outputs for power spectrum, and optionally provides correlation function data. The Fortran code has two major options for power spectrum calculations; -fast, which quickly computes the power spectrum at two-loop level (typically a few seconds) using the pre-computed data set of PT kernels for fiducial cosmological models, and -direct, in which the code first applies the fast method, and then follows the regularized expression for power spectrum to directly evaluate the multi-dimensional integrals. The output results are the power spectrum of direct calculation and difference of the results between fast and direct method. The code also gives the data set of PT diagrams necessary for power spectrum calculations from which the power spectrum can be constructed.

[ascl:1404.011] CAP_LOESS_1D & CAP_LOESS_2D: Recover mean trends from noisy data

The IDL programs CAP_LOESS_1D and CAP_LOESS_2D provide improved implementations of the one-dimensional (Clevelend 1979) and two-dimensional (Cleveland & Devlin 1988) Locally Weighted Regression (LOESS) methods to recover the mean trends of the population from noisy data in one or two dimensions. They include a robust approach to deal with outliers (bad data).

[ascl:1404.010] VictoriaReginaModels: Stellar evolutionary tracks

The Victoria–Regina stellar models are comprised of seventy-two grids of stellar evolutionary tracks accompanied by complementary zero-age horizontal branches and are presented in “equivalent evolutionary phase” (.eep) files. This Fortran 77 software interpolates isochrones, isochrone population functions, luminosity functions, and color functions of stellar evolutionary tracks.

[ascl:1404.009] carma_pack: MCMC sampler for Bayesian inference

carma_pack is an MCMC sampler for performing Bayesian inference on continuous time autoregressive moving average models. These models may be used to model time series with irregular sampling. The MCMC sampler utilizes an adaptive Metropolis algorithm combined with parallel tempering.

[ascl:1404.008] Comet: Multifunction VOEvent broker

Comet is a Python implementation of the VOEvent Transport Protocol (VTP). VOEvent is the IVOA system for describing transient celestial events. Details of transients detected by many projects, including Fermi, Swift, and the Catalina Sky Survey, are currently made available as VOEvents, which is also the standard alert format by future facilities such as LSST and SKA. The core of Comet is a multifunction VOEvent broker, capable of receiving events either by subscribing to one or more remote brokers or by direct connection from authors; it can then both process those events locally and forward them to its own subscribers. In addition, Comet provides a tool for publishing VOEvents to the global VOEvent backbone.

[ascl:1404.007] AMBIG: Automated Ambiguity-Resolution Code

AMBIG is a fast, automated algorithm for resolving the 180° ambiguity in vector magnetic field data, including those data from Hinode/Spectropolarimeter. The Fortran-based code is loosely based on the Minimum Energy Algorithm, and is distributed to provide ambiguity-resolved data for the general user community.

[ascl:1404.006] TORUS: Radiation transport and hydrodynamics code

TORUS is a flexible radiation transfer and radiation-hydrodynamics code. The code has a basic infrastructure that includes the AMR mesh scheme that is used by several physics modules including atomic line transfer in a moving medium, molecular line transfer, photoionization, radiation hydrodynamics and radiative equilibrium. TORUS is useful for a variety of problems, including magnetospheric accretion onto T Tauri stars, spiral nebulae around Wolf-Rayet stars, discs around Herbig AeBe stars, structured winds of O supergiants and Raman-scattered line formation in symbiotic binaries, and dust emission and molecular line formation in star forming clusters. The code is written in Fortran 2003 and is compiled using a standard Gnu makefile. The code is parallelized using both MPI and OMP, and can use these parallel sections either separately or in a hybrid mode.

[ascl:1404.005] SER: Subpixel Event Repositioning Algorithms

Subpixel Event Repositioning (SER) techniques significantly improve the already unprecedented spatial resolution of Chandra X-ray imaging with the Advanced CCD Imaging Spectrometer (ACIS). Chandra CCD SER techniques are based on the premise that the impact position of events can be refined, based on the distribution of charge among affected CCD pixels. Unlike ACIS SER models that are restricted to corner split (3- and 4-pixel) events and assume that such events take place at the split pixel corners, this IDL code uses two-pixel splits as well, and incorporates more realistic estimates of photon impact positions.

[ascl:1404.004] SAS: Science Analysis System for XMM-Newton observatory

The Science Analysis System (SAS) is an extensive suite of software tasks developed to process the data collected by the XMM-Newton Observatory. The SAS extracts standard (spectra, light curves) and/or customized science products, and allows reproductions of the reduction pipelines run to get the PPS products from the ODFs files. SAS includes a powerful and extensive suite of FITS file manipulation packages based on the Data Access Layer library.

[ascl:1404.002] ZDCF: Z-Transformed Discrete Correlation Function

The cross-correlation function (CCF) is commonly employed in the study of AGN, where it is used to probe the structure of the broad line region by line reverberation, to study the continuum emission mechanism by correlating multi-waveband light curves and to seek correlations between the variability and other AGN properties. The z -transformed discrete correlation function (ZDCF) is a method for estimating the CCF of sparse, unevenly sampled light curves. Unlike the commonly used interpolation method, it does not assume that the light curves are smooth and it does provide errors on its estimates.

[ascl:1404.001] LTS_LINEFIT & LTS_PLANEFIT: LTS fit of lines or planes

LTS_LINEFIT and LTS_PLANEFIT are IDL programs to robustly fit lines and planes to data with intrinsic scatter. The code combines the Least Trimmed Squares (LTS) robust technique, proposed by Rousseeuw (1984) and optimized in Rousseeuw & Driessen (2006), into a least-squares fitting algorithm which allows for intrinsic scatter. This method makes the fit converge to the correct solution even in the presence of a large number of catastrophic outliers, where the much simpler σ-clipping approach can converge to the wrong solution.

[ascl:1403.026] SOFA: Standards of Fundamental Astronomy

SOFA (Standards Of Fundamental Astronomy) is a collection of subprograms, in source-code form, that implement official IAU algorithms for fundamental astronomy computations. SOFA offers more than 160 routines for fundamental astronomy, including time scales (including dealing with leap seconds), Earth rotation, sidereal time, precession, nutation, polar motion, astrometry and transforms between various reference systems (e.g. BCRS, ICRS, GCRS, CIRS, TIRS, ITRS). The subprograms are supported by 55 vector/matrix routines, and are available in both Fortran77 and C implementations.

[ascl:1403.025] SLALIB: A Positional Astronomy Library

SLALIB is a library of routines that make accurate and reliable positional-astronomy applications easier to write. Most SLALIB routines are concerned with astronomical position and time, but a number have wider trigonometrical, numerical or general applications. A Fortran implementation of SLALIB under GPL licensing is available as part of Starlink (ascl:1110.012).

[ascl:1403.024] GAIA: Graphical Astronomy and Image Analysis Tool

GAIA is an image and data-cube display and analysis tool for astronomy. It provides the usual facilities of image display tools, plus more astronomically useful ones such as aperture and optimal photometry, contouring, source detection, surface photometry, arbitrary region analysis, celestial coordinate readout, calibration and modification, grid overlays, blink comparison, defect patching and the ability to query on-line catalogues and image servers. It can also display slices from data-cubes, extract and visualize spectra as well as perform full 3D rendering. GAIA uses the Starlink software environment (ascl:1110.012) and is derived from the ESO SkyCat tool (ascl:1109.019).

[ascl:1403.023] ASTERIX: X-ray Data Processing System

ASTERIX is a general purpose X-ray data reduction package optimized for ROSAT data reduction. ASTERIX uses the Starlink software environment (ascl:1110.012).

[ascl:1403.022] KAPPA: Kernel Applications Package

KAPPA comprising about 180 general-purpose commands for image processing, data visualization, and manipulation of the standard Starlink data format--the NDF. It works with Starlink's various specialized packages; in addition to the NDF, KAPPA can also process data in other formats by using the "on-the-fly" conversion scheme. Many commands can process data arrays of arbitrary dimension, and others work on both spectra and images. KAPPA operates from both the UNIX C-shell and the ICL command language. KAPPA uses the Starlink environment (ascl:1110.012).

[ascl:1403.021] CCDPACK: CCD Data Reduction Package

CCDPACK contains programs to debias, remove dark current, flatfield, register, resample and normalize data from single- or multiple-CCD instruments. The basic reduction stages can be set up using an X based GUI that controls an automated reduction system so one can to start working without any detailed knowledge of the package (or indeed of CCD reduction). Registration is performed using graphical, script based or automated techniques that keep the amount of work to a minimum. CCDPACK uses the Starlink environment (ascl:1110.012).

[ascl:1403.020] disc2vel: Tangential and radial velocity components derivation

Disc2vel derives tangential and radial velocity components in the equatorial plane of a barred stellar disc from the observed line-of-sight velocity, assuming geometry of a thin disc. The code is written in IDL, and the method assumes that the bar is close to steady state (i.e. does not evolve fast) and that both morphology and kinematics are symmetrical with respect to the major axis of the bar.

[ascl:1403.019] KINEMETRY: Analysis of 2D maps of kinematic moments of LOSVD

KINEMETRY, written in IDL, analyzes 2D maps of the moments of the line-of-sight velocity distribution (LOSVD). It generalizes the surface photometry to all moments of the LOSVD. It performs harmonic expansion of 2D maps of observed moments (surface brightness, velocity, velocity dispersion, h3, h4, etc.) along the best fitting ellipses (either fixed or free to change along the radii) to robustly quantify maps of the LOSVD moments, describe trends in structures, and detect morphological and kinematic sub-components.

[ascl:1403.018] JAM: Jeans Anisotropic MGE modeling method

The Jeans Anisotropic MGE (JAM) modeling method uses the Multi-Gaussian Expansion parameterization for the galaxy surface brightness. The code allows for orbital anisotropy (three-integrals distribution function) and also provides the full second moment tensor, including proper motions and radial velocities.

[ascl:1403.017] MGE_FIT_SECTORS: Multi-Gaussian Expansion fits to galaxy images

MGE_FIT_SECTORS performs Multi-Gaussian Expansion (MGE) fits to galaxy images. The MGE parameterizations are useful in the construction of realistic dynamical models of galaxies, PSF deconvolution of images, the correction and estimation of dust absorption effects, and galaxy photometry. The algorithm is well suited for use with multiple-resolution images (e.g. Hubble Space Telescope (HST) and ground-based images).

[ascl:1403.016] Viewpoints: Fast interactive linked plotting of large multivariate data sets

Viewpoints is an interactive tool for exploratory visual analysis of large high-dimensional (multivariate) data. It uses linked scatterplots to find relations in a few seconds that can take much longer with other plotting tools. Its features include linked scatter plots with brushing, dynamic histograms, normalization, and outlier detection/removal.

[ascl:1403.015] computePk: Power spectrum computation

ComputePk computes the power spectrum in cosmological simulations. It is MPI parallel and has been tested up to a 4096^3 mesh. It uses the FFTW library. It can read Gadget-3 and GOTPM outputs, and computes the dark matter component. The user may choose between NGP, CIC, and TSC for the mass assignment scheme.

[ascl:1403.014] T(dust) as a function of sSFR

This IDL code returns the dust temperature of a galaxy from its redshift, SFR and stellar mass; it can also predict the observed monochromatic fluxes of the galaxy. These monochromatic fluxes correspond to those of a DH SED template with the appropriate dust temperature and the appropriate normalization. Dust temperatures and fluxes predictions are only valid and provided in the redshift, stellar mass, SSFR and wavelength ranges 0 < z < 2.5, Mstar> 10^10 Msun, 10^-11 < SSFR[yr-1]< 10^-7 and 30um < lambda_rest < 2mm.

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