Results 1401-1500 of 2703 (2642 ASCL, 61 submitted)

[ascl:1910.015]
MarsLux: Illumination Mars maps generator

MarsLux generates illumination maps of Mars from Digital Terrain Model (DTM), permitting users to investigate in detail the illumination conditions on Mars based on its topography and the relative position of the Sun. MarsLux consists of two Python codes, SolaPar and MarsLux. SolaPar calculates the matrix with solar parameters for one date or a range between the two. The Marslux code generates the illumination maps using the same DTM and the files generated by SolaPar. The resulting illumination maps show areas that are fully illuminated, areas in total shadow, and areas with partial shade, and can be used for geomorphological studies to examine gullies, thermal weathering, or mass wasting processes as well as for producing energy budget maps for future exploration missions.

[ascl:1911.005]
MARTINI: Mock spatially resolved spectral line observations of simulated galaxies

MARTINI (Mock APERTIF-like Radio Telescope Interferometry of the Neutal ISM) creates synthetic resolved HI line observations (data cubes) of smoothed-particle hydrodynamics simulations of galaxies. The various aspects of the mock-observing process are divided logically into sub-modules handling the data cube, source, beam, noise, spectral model and SPH kernel. MARTINI is object-oriented: each sub-module provides a class (or classes) which can be configured as desired. For most sub-modules, base classes are provided to allow for straightforward customization. Instances of each sub-module class are then given as parameters to the Martini class. A mock observation is then constructed by calling a handful of functions to execute the desired steps in the mock-observing process.

[ascl:2106.005]
Marvin: Data access and visualization for MaNGA

Cherinka, Brian; Andrews, Brett H.; Sánchez-Gallego, José; Brownstein, Joel; Argudo-Fernández, María; Blanton, Michael; Bundy, Kevin; Jones, Amy; Masters, Karen; Law, David R.; Rowlands, Kate; Weijmans, Anne-Marie; Westfall, Kyle; Yan, Renbin

Marvin searches, accesses, and visualizes data from the Mapping Nearby Galaxies at Apache Point Observatory (MaNGA) survey. Written in Python, it provides tools for easy efficient interaction with the MaNGA data via local files, files retrieved from the Science Archive Server, or data directly grabbed from the database. The tools come mainly in the form of convenience functions and classes for interacting with the data. Also available is a web app, Marvin-web, offers an easily accessible interface for searching the MaNGA data and visual exploration of individual MaNGA galaxies or of the entire sample, and a powerful query functionality that uses the API to query the MaNGA databases and return the search results to your python session. Marvin-API is the critical link that allows Marvin-tools and Marvin-web to interact with the databases, which enables users to harness the statistical power of the MaNGA data set.

[ascl:1302.001]
MARX: Model of AXAF Response to X-rays

MARX (Model of AXAF Response to X-rays) is a suite of programs designed to enable the user to simulate the on-orbit performance of the Chandra satellite. MARX provides a detailed ray-trace simulation of how Chandra responds to a variety of astrophysical sources and can generate standard FITS events files and images as output. It contains models for the HRMA mirror system onboard Chandra as well as the HETG and LETG gratings and all focal plane detectors.

[ascl:1711.020]
MARXS: Multi-Architecture Raytrace Xray mission Simulator

MARXS (Multi-Architecture-Raytrace-Xraymission-Simulator) simulates X-ray observatories. Primarily designed to simulate X-ray instruments on astronomical X-ray satellites and sounding rocket payloads, it can also be used to ray-trace experiments in the laboratory. MARXS performs polarization Monte-Carlo ray-trace simulations from a source (astronomical or lab) through a collection of optical elements such as mirrors, baffles, and gratings to a detector.

[ascl:1605.001]
MARZ: Redshifting Program

MARZ analyzes objects and produces high quality spectroscopic redshift measurements. Spectra not matched correctly by the automatic algorithm can be redshifted manually by cycling automatic results, manual template comparison, or marking spectral features. The software has an intuitive interface and powerful automatic matching capabilities on spectra, and can be run interactively or from the command line, and runs as a Web application. MARZ can be run on a local server; it is also available for use on a public server.

[ascl:2101.007]
Mask galaxy: Machine learning pipeline for morphological segmentation of galaxies

Mask galaxy is an automatic machine learning pipeline for detection, segmentation and morphological classification of galaxies. The model is based on the Mask R-CNN Deep Learning architecture. This model of instance segmentation also performs image segmentation at the pixel level, and has shown a Mean Average Precision (mAP) of 0.93 in morphological classification of spiral or elliptical galaxies.

[ascl:1101.009]
MasQU: Finite Differences on Masked Irregular Stokes Q,U Grids

The detection of B-mode polarization in the CMB is one of the most important outstanding tests of inflationary cosmology. One of the necessary steps for extracting polarization information in the CMB is reducing contamination from so-called "ambiguous modes" on a masked sky, which contain leakage from the larger E-mode signal. This can be achieved by utilising derivative operators on the real-space Stokes Q and U parameters. This paper presents an algorithm and a software package to perform this procedure on the nearly full sky, i.e., with projects such as the Planck Surveyor and future satellites in mind; in particular, the package can perform finite differences on masked, irregular grids and is applied to a semi-regular spherical pixellization, the HEALPix grid. The formalism reduces to the known finite-difference solutions in the case of a regular grid. We quantify full-sky improvements on the possible bounds on the CMB B-mode signal. We find that in the specific case of E and B-mode separation, there exists a "pole problem" in our formalism which produces signal contamination at very low multipoles l. Several solutions to the "pole problem" are presented; one proposed solution facilitates a calculation of a general Gaussian quadrature scheme, which finds application in calculating accurate harmonic coefficients on the HEALPix sphere. Nevertheless, on a masked sphere the software represents a considerable reduction in B-mode noise from limited sky coverage.

[ascl:1104.004]
MASSCLEAN: MASSive CLuster Evolution and ANalysis Package

MASSCLEAN is a sophisticated and robust stellar cluster image and photometry simulation package. This package is able to create color-magnitude diagrams and standard FITS images in any of the traditional optical and near-infrared bands based on cluster characteristics input by the user, including but not limited to distance, age, mass, radius and extinction. At the limit of very distant, unresolved clusters, we have checked the integrated colors created in MASSCLEAN against those from other simple stellar population (SSP) models with consistent results. Because the algorithm populates the cluster with a discrete number of tenable stars, it can be used as part of a Monte Carlo Method to derive the probabilistic range of characteristics (integrated colors, for example) consistent with a given cluster mass and age.

[ascl:1401.008]
massconvert: Halo Mass Conversion

massconvert, written in Fortran, provides driver and fitting routines for converting halo mass definitions from one spherical overdensity to another assuming an NFW density profile. In surveys that probe ever lower cluster masses and temperatures, sample variance is generally comparable to or greater than shot noise and thus cannot be neglected in deriving precision cosmological constraints; massconvert offers an accurate fitting formula for the conversion between different definitions of halo mass.

[ascl:1406.010]
MATCH: A program for matching star lists

MATCH matches up items in two different lists, which can have two different systems of coordinates. The program allows the two sets of coordinates to be related by a linear, quadratic, or cubic transformation. MATCH was designed and written to work on lists of stars and other astronomical objects but can be applied to other types of data. In order to match two lists of N points, the main algorithm calls for O(N^6) operations; though not the most efficient choice, it does allow for arbitrary translation, rotation, and scaling.

[ascl:1601.018]
MATPHOT: Stellar photometry and astrometry with discrete point spread functions

A discrete Point Spread Function (PSF) is a sampled version of a continuous two-dimensional PSF. The shape information about the photon scattering pattern of a discrete PSF is typically encoded using a numerical table (matrix) or a FITS image file. MATPHOT shifts discrete PSFs within an observational model using a 21-pixel- wide damped sinc function and position partial derivatives are computed using a five-point numerical differentiation formula. MATPHOT achieves accurate and precise stellar photometry and astrometry of undersampled CCD observations by using supersampled discrete PSFs that are sampled two, three, or more times more finely than the observational data.

[ascl:2008.018]
maxsmooth: Derivative constrained function fitting

maxsmooth fits derivative constrained functions (DCF) such as Maximally Smooth Functions (MSFs) to data sets. MSFs are functions for which there are no zero crossings in derivatives of order m >= 2 within the domain of interest. They are designed to prevent the loss of signals when fitting out dominant smooth foregrounds or large magnitude signals that mask signals of interest. Here "smooth" means that the foregrounds follow power law structures and do not feature turning points in the band of interest. maxsmooth uses quadratic programming implemented with CVXOPT (ascl:2008.017) to fit data subject to a fixed linear constraint, Ga <= 0, where the product Ga is a matrix of derivatives. The code tests the <= 0 constraint multiplied by a positive or negative sign and can test every available sign combination but by default, it implements a sign navigating algorithm.

[ascl:1205.008]
Mayavi2: 3D Scientific Data Visualization and Plotting

Mayavi provides general-purpose 3D scientific visualizations. It offers easy interactive tools for data visualization that fit with the scientific user's workflow. Mayavi provides several entry points: a full-blown interactive application; a Python library with both a MATLAB-like interface focused on easy scripting and a feature-rich object hierarchy; widgets associated with these objects for assembling in a domain-specific application, and plugins that work with a general purpose application-building framework.

[ascl:1602.020]
mbb_emcee: Modified Blackbody MCMC

Mbb_emcee fits modified blackbodies to photometry data using an affine invariant MCMC. It has large number of options which, for example, allow computation of the IR luminosity or dustmass as part of the fit. Carrying out a fit produces a HDF5 output file containing the results, which can either be read directly, or read back into a mbb_results object for analysis. Upper and lower limits can be imposed as well as Gaussian priors on the model parameters. These additions are useful for analyzing poorly constrained data. In addition to standard Python packages scipy, numpy, and cython, mbb_emcee requires emcee (ascl:1303.002), Astropy (ascl:1304.002), h5py, and for unit tests, nose.

[ascl:2010.001]
MBF: MOLSCAT 2020, BOUND, and FIELD for atomic and molecular collisions

MOLSCAT, which supercedes MOLSCAT version 14 (ascl:1206.004), performs non-reactive quantum scattering calculations for atomic and molecular collisions using coupled-channel methods. Simple atom-molecule and molecule-molecule collision types are coded internally and additional ones may be handled with plug-in routines. Plug-in routines may include external magnetic, electric or photon fields (and combinations of them).

The package also includes BOUND, which performs calculations of bound-state energies in weakly bound atomic and molecular systems using coupled-channel methods, and FIELD, a development of BOUND that locates values of external fields at which a bound state exists with a specified energy. Though the three programs have different applications, they use closely related methods, share many subroutines, and are released with a single code base.

[ascl:1705.008]
MBProj2: Multi-Band x-ray surface brightness PROJector 2

MBProj2 obtains thermodynamic profiles of galaxy clusters. It forward-models cluster X-ray surface brightness profiles in multiple bands, optionally assuming hydrostatic equilibrium. The code is a set of Python classes the user can use or extend. When modelling a cluster assuming hydrostatic equilibrium, the user chooses a form for the density profile (e.g. binning or a beta model), the metallicity profile, and the dark matter profile (e.g. NFW). If hydrostatic equilibrium is not assumed, a temperature profile model is used instead of the dark matter profile. The code uses the emcee Markov Chain Monte Carlo code (ascl:1303.002) to sample the model parameters, using these to produce chains of thermodynamic profiles.

[ascl:1703.014]
MC-SPAM: Monte-Carlo Synthetic-Photometry/Atmosphere-Model

MC-SPAM (Monte-Carlo Synthetic-Photometry/Atmosphere-Model) generates limb-darkening coefficients from models that are comparable to transit photometry; it extends the original SPAM algorithm by Howarth (2011) by taking in consideration the uncertainty on the stellar and transit parameters of the system under analysis.

[ascl:1610.013]
MC^{3}: Multi-core Markov-chain Monte Carlo code

Cubillos, Patricio; Harrington, Joseph; Lust, Nate; Foster, AJ; Stemm, Madison; Loredo, Tom; Stevenson, Kevin; Campo, Chris; Hardin, Matt; Hardy, Ryan

MC^{3} (Multi-core Markov-chain Monte Carlo) is a Bayesian statistics tool that can be executed from the shell prompt or interactively through the Python interpreter with single- or multiple-CPU parallel computing. It offers Markov-chain Monte Carlo (MCMC) posterior-distribution sampling for several algorithms, Levenberg-Marquardt least-squares optimization, and uniform non-informative, Jeffreys non-informative, or Gaussian-informative priors. MC^{3} can share the same value among multiple parameters and fix the value of parameters to constant values, and offers Gelman-Rubin convergence testing and correlated-noise estimation with time-averaging or wavelet-based likelihood estimation methods.

[ascl:1204.005]
MC3D: Monte-Carlo 3D Radiative Transfer Code

MC3D is a 3D continuum radiative transfer code; it is based on the Monte-Carlo method and solves the radiative transfer problem self-consistently. It is designed for the simulation of dust temperatures in arbitrary geometric configurations and the resulting observables: spectral energy distributions, wavelength-dependent images, and polarization maps. The main objective is the investigation of "dust-dominated" astrophysical systems such as young stellar objects surrounded by an optically thick circumstellar disk and an optically thin(ner) envelope, debris disks around more evolved stars, asymptotic giant branch stars, the dust component of the interstellar medium, and active galactic nuclei.

[ascl:1511.008]
MCAL: M dwarf metallicity and temperature calculator

MCAL calculates high precision metallicities and effective temperatures for M dwarfs; the method behaves properly down to R = 40 000 and S/N = 25, and results were validated against a sample of stars in common with SOPHIE high resolution spectra.

[ascl:2105.008]
MCALF: Velocity information from spectral imaging observations

MCALF (Multi-Component Atmospheric Line Fitting) accurately constrains velocity information from spectral imaging observations using machine learning techniques. It is useful for solar physicists trying to extract line-of-sight (LOS) Doppler velocity information from spectral imaging observations (Stokes I measurements) of the Sun. A toolkit is provided that can be used to define a spectral model optimized for a particular dataset. MCALF is particularly suited for extracting velocity information from spectral imaging observations where the individual spectra can contain multiple spectral components. Such multiple components are typically present when active solar phenomenon occur within an isolated region of the solar disk. Spectra within such a region will often have a large emission component superimposed on top of the underlying absorption spectral profile from the quiescent solar atmosphere.

[ascl:1906.017]
mcfit: Multiplicatively Convolutional Fast Integral Transforms

mcfit computes integral transforms, inverse transforms without analytic inversion, and integral kernels as derivatives. It can also transform input array along any axis, output the matrix form, an is easily extensible for other kernels.

[ascl:1107.015]
McLuster: A Tool to Make a Star Cluster

The tool McLuster is an open source code that can be used to either set up initial conditions for N-body computations or, alternatively, to generate artificial star clusters for direct investigation. There are two different versions of the code, one basic version for generating all kinds of unevolved clusters (in the following called mcluster) and one for setting up evolved stellar populations at a given age. The former is completely contained in the C file main.c. The latter (dubbed mcluster_sse) is more complex and requires additional FORTRAN routines, namely the Single-Star Evolution (SSE) routines by Hurley, Pols & Tout (ascl:1303.015) that are provided with the McLuster code.

[ascl:1407.004]
MCMAC: Monte Carlo Merger Analysis Code

Monte Carlo Merger Analysis Code (MCMAC) aids in the study of merging clusters. It takes observed priors on each subcluster's mass, radial velocity, and projected separation, draws randomly from those priors, and uses them in a analytic model to get posterior PDF's for merger dynamic properties of interest (e.g. collision velocity, time since collision).

[ascl:2011.004]
MCMCDiagnostics: Markov Chain Monte Carlo convergence diagnostics

MCMCDiagnostics contains two diagnostics, written in Julia, for Markov Chain Monte Carlo. The first is potential_scale_reduction(chains...), which estimates the potential scale reduction factor, also known as Rhat, for multiple scalar chains . The second, effective_sample_size(chain), calculates the effective sample size for scalar chains. These diagnostics are intended as building blocks for use by other libraries.

[ascl:2001.012]
MCMCI: Markov Chain Monte Carlo + Isochrones method for characterizing exoplanetary systems

MCMCI (Markov chain Monte Carlo + isochrones) characterizes a whole exoplanetary system directly by modeling the star and its planets simultaneously. The code, written in Fortran, uses light curves and basic stellar parameters with a transit analysis algorithm that interacts with stellar evolutionary models, thus using both model-dependent and empirical age indicators to characterize the system.

[ascl:1210.017]
McPHAC: McGill Planar Hydrogen Atmosphere Code

The McGill Planar Hydrogen Atmosphere Code (McPHAC) v1.1 calculates the hydrostatic equilibrium structure and emergent spectrum of an unmagnetized hydrogen atmosphere in the plane-parallel approximation at surface gravities appropriate for neutron stars. McPHAC incorporates several improvements over previous codes for which tabulated model spectra are available: (1) Thomson scattering is treated anisotropically, which is shown to result in a 0.2%-3% correction in the emergent spectral flux across the 0.1-5 keV passband; (2) the McPHAC source code is made available to the community, allowing it to be scrutinized and modified by other researchers wishing to study or extend its capabilities; and (3) the numerical uncertainty resulting from the discrete and iterative solution is studied as a function of photon energy, indicating that McPHAC is capable of producing spectra with numerical uncertainties <0.01%. The accuracy of the spectra may at present be limited to ~1%, but McPHAC enables researchers to study the impact of uncertain inputs and additional physical effects, thereby supporting future efforts to reduce those inaccuracies. Comparison of McPHAC results with spectra from one of the previous model atmosphere codes (NSA) shows agreement to lsim1% near the peaks of the emergent spectra. However, in the Wien tail a significant deficit of flux in the spectra of the previous model is revealed, determined to be due to the previous work not considering large enough optical depths at the highest photon frequencies. The deficit is most significant for spectra with T eff < 105.6 K, though even there it may not be of much practical importance for most observations.

[ascl:2107.025]
MCPM: Modified CPM method

MCPM extracts K2 photometry in dense stellar regions; the code is a modification and extension of the K2-CPM package (ascl:2107.024), which was developed for less-crowded fields. MCPM uses the pixel response function together with accurate astrometric grids, combining signals from a few pixels, and simultaneously fits for an astrophysical model to produce extracted more precise K2 photometry.

[ascl:2005.019]
MCRaT: Monte Carlo Radiation Transfer

MCRaT (Monte Carlo Radiation Transfer) analyzes the radiation signature expected from astrophysical outflows. MCRaT injects photons in a FLASH (ascl:1010.082) simulation and individually propagates and compton scatters the photons through the fluid until the end of the simulation. This process of injection and propagating occurs for a user specified number of times until there are no more photons to be injected. Users can then construct light curves and spectra with the MCRaT calculated results. The hydrodynamic simulations used with this version of MCRaT must be in 2D; however, the photon propagation and scattering is done in 3D by assuming cylindrical symmetry. Additionally, MCRaT uses the full Klein–Nishina cross section including the effects of polarization, which can be fully simulated in the code. MCRaT works with FLASH hydrodynamic simulations and PLUTO (ascl:1010.045) AMR simulations, with both 2D spherical (r, equation) and 2D cartesian ((x,y) and (r,z)).

[ascl:1907.026]
MCRGNet: Morphological Classification of Radio Galaxy Network

MCRGNet (Morphological Classification of Radio Galaxy Network) classifies radio galaxies of different morphologies. It is based on the Convolutional Neural Network (CNN), which is trained and applied under a three-step framework: 1.) pretraining the network unsupervisedly with unlabeled samples, 2.) fine-tuning the pretrained network parameters supervisedly with labeled samples, and 3.) classifying a new radio galaxy by the trained network. The code uses a dichotomous tree classifier composed of cascaded CNN based subclassifiers.

[ascl:1201.001]
McScatter: Three-Body Scattering with Stellar Evolution

McScatter illustrates a method of combining stellar dynamics with stellar evolution. The method is intended for elaborate applications, especially the dynamical evolution of rich star clusters. The dynamics is based on binary scattering in a multi-mass field of stars with uniform density and velocity dispersion, using the scattering cross section of Giersz (MNRAS, 2001, 324, 218-30).

[ascl:2006.022]
MCSED: Spectral energy distribution fitting package for galactic systems

MCSED models the optical, near-infrared and infrared spectral energy distribution (SED) of galactic systems. Its modularity and options make it flexible and able to address the varying physical properties of galaxies over cosmic time and environment and adjust to changes in understanding of stellar evolution, the details of mass loss, and the products of binary evolution through substitution or addition of new datasets or algorithms. MCSED is built to fit a galaxy’s full SED, from the far-UV to the far-IR. Among other physical processes, it can model continuum emission from stars, continuum and line-emission from ionized gas, attenuation from dust, and mid- and far-IR emission from dust and polycyclic aromatic hydrocarbons (PAHs). MCSED performs its calculations by creating a complex stellar population (CSP) out of a linear combination of simple-stellar populations (SSPs) using an efficient Markov Chain Monte Carlo algorithm. It is very quick, and takes advantage of parallel processing.

[ascl:1504.008]
MCSpearman: Monte Carlo error analyses of Spearman's rank test

Spearman’s rank correlation test is commonly used in astronomy to discern whether a set of two variables are correlated or not. Unlike most other quantities quoted in astronomical literature, the Spearman’s rank correlation coefficient is generally quoted with no attempt to estimate the errors on its value. This code implements a number of Monte Carlo based methods to estimate the uncertainty on the Spearman’s rank correlation coefficient.

[ascl:1302.012]
ME(SSY)**2: Monte Carlo Code for Star Cluster Simulations

ME(SSY)**2 stands for “Monte-carlo Experiments with Spherically SYmmetric Stellar SYstems." This code simulates the long term evolution of spherical clusters of stars; it was devised specifically to treat dense galactic nuclei. It is based on the pioneering Monte Carlo scheme proposed by Hénon in the 70's and includes all relevant physical ingredients (2-body relaxation, stellar mass spectrum, collisions, tidal disruption, ldots). It is basically a Monte Carlo resolution of the Fokker-Planck equation. It can cope with any stellar mass spectrum or velocity distribution. Being a particle-based method, it also allows one to take stellar collisions into account in a very realistic way. This unique code, featuring most important physical processes, allows million particle simulations, spanning a Hubble time, in a few CPU days on standard personal computers and provides a wealth of data only rivalized by N-body simulations. The current version of the software requires the use of routines from the "Numerical Recipes in Fortran 77" (http://www.nrbook.com/a/bookfpdf.php).

[ascl:1205.001]
Mechanic: Numerical MPI framework for dynamical astronomy

The Mechanic package is a numerical framework for dynamical astronomy, designed to help in massive numerical simulations by efficient task management and unified data storage. The code is built on top of the Message Passing Interface (MPI) and Hierarchical Data Format (HDF5) standards and uses the Task Farm approach to manage numerical tasks. It relies on the core-module approach. The numerical problem implemented in the user-supplied module is separated from the host code (core). The core is designed to handle basic setup, data storage and communication between nodes in a computing pool. It has been tested on large CPU-clusters, as well as desktop computers. The Mechanic may be used in computing dynamical maps, data optimization or numerical integration.

[ascl:1106.006]
MECI: A Method for Eclipsing Component Identification

We describe an automated method for assigning the most probable physical parameters to the components of an eclipsing binary, using only its photometric light curve and combined colors. With traditional methods, one attempts to optimize a multi-parameter model over many iterations, so as to minimize the chi-squared value. We suggest an alternative method, where one selects pairs of coeval stars from a set of theoretical stellar models, and compares their simulated light curves and combined colors with the observations. This approach greatly reduces the parameter space over which one needs to search, and allows one to estimate the components' masses, radii and absolute magnitudes, without spectroscopic data. We have implemented this method in an automated program using published theoretical isochrones and limb-darkening coefficients. Since it is easy to automate, this method lends itself to systematic analyses of datasets consisting of photometric time series of large numbers of stars, such as those produced by OGLE, MACHO, TrES, HAT, and many others surveys.

[ascl:2105.009]
MeerCRAB: Transient classifier using a deep learning model

MeerCRAB (MeerLICHT Classification of Real and Bogus Transients using Deep Learning) filters out false detections of transients from true astrophysical sources in the transient detection pipeline of the MeerLICHT telescope. It uses a deep learning model based on Convolutional Neural Network.

[ascl:1906.018]
MEGAlib: Medium Energy Gamma-ray Astronomy library

The Medium Energy Gamma-ray Astronomy library (MEGAlib) simulates, calibrates, and analyzes data of hard X-ray and gamma-ray detectors, with a specialization on Compton telescopes. The library comprises all necessary data analysis steps for these telescopes, from simulation/measurements via calibration, event reconstruction to image reconstruction.

MEGAlib contains a geometry and detector description tool for the detailed modeling of different detector types and characteristics, and provides an easy to use simulation program based on Geant4 (ascl:1010.079). For different Compton telescope detector types (electron tracking, multiple Compton or time of flight based), specialized Compton event reconstruction algorithms are implemented in different approaches (Chi-square and Bayesian). The high level data analysis tools calculate response matrices, perform image deconvolution (specialized in list-mode-likelihood-based Compton image reconstruction), determine detector resolutions and sensitivities, retrieve spectra, and determine polarization modulations.

[ascl:1203.008]
MegaLUT: Correcting ellipticity measurements of galaxies

MegaLUT is a simple and fast method to correct ellipticity measurements of galaxies from the distortion by the instrumental and atmospheric point spread function (PSF), in view of weak lensing shear measurements. The method performs a classification of galaxies and associated PSFs according to measured shape parameters, and builds a lookup table of ellipticity corrections by supervised learning. This new method has been applied to the GREAT10 image analysis challenge, and demonstrates a refined solution that obtains the highly competitive quality factor of Q = 142, without any power spectrum denoising or training. Of particular interest is the efficiency of the method, with a processing time below 3 ms per galaxy on an ordinary CPU.

[ascl:1711.012]
megaman: Manifold Learning for Millions of Points

megaman is a scalable manifold learning package implemented in python. It has a front-end API designed to be familiar to scikit-learn but harnesses the C++ Fast Library for Approximate Nearest Neighbors (FLANN) and the Sparse Symmetric Positive Definite (SSPD) solver Locally Optimal Block Precodition Gradient (LOBPCG) method to scale manifold learning algorithms to large data sets. It is designed for researchers and as such caches intermediary steps and indices to allow for fast re-computation with new parameters.

[ascl:2109.025]
Menura: Multi-GPU numerical model for space plasma simulation

Menura simulates the interaction between a fully turbulent solar wind and various bodies of the solar system using a novel two-step approach. It is an advanced numerical tool for self-consistent modeling that bridges planetary science and plasma physics. Menura is built around a hybrid Particle-In-Cell solver, treating electrons as a charge-neutralising fluid, and ions as massive particles. It solves iteratively the particles’ dynamics, gathers particle moments at the nodes of a grid, at which the magnetic field is also computed, and then solves the Maxwell equations. This solver uses the popular Current Advance Method (CAM).

[ascl:1410.002]
MEPSA: Multiple Excess Peak Search Algorithm

MEPSA (Multiple Excess Peak Search Algorithm) identifies peaks within a uniformly sampled time series affected by uncorrelated Gaussian noise. MEPSA scans the time series at different timescales by comparing a given peak candidate with a variable number of adjacent bins. While this has originally been conceived for the analysis of gamma-ray burst light (GRB) curves, its usage can be readily extended to other astrophysical transient phenomena whose activity is recorded through different surveys. MEPSA's high flexibility permits the mask of excess patterns it uses to be tailored and optimized without modifying the code.

[ascl:1209.010]
MeqTrees: Software package for implementing Measurement Equations

MeqTrees is a software package for implementing Measurement Equations. This makes it uniquely suited for simulation and calibration of radioastronomical data, especially that involving new radiotelescopes and observational regimes. MeqTrees is implemented as a Python-based front-end called the meqbrowser, and an efficient (C++-based) computational back-end called the meqserver. Numerical models are defined on the front-end via a Python-based Tree Definition Language (TDL), then rapidly executed on the back-end. The use of TDL facilitates an extremely short turn-around time for experimentation with new ideas. This is also helped by unprecedented visualization capabilities for all final and intermediate results. A flexible data model and a number of important optimizations in the back-end ensures that the numerical performance is comparable to that of hand-written code.

MeqTrees includes a highly capable FITS viewer and sky model manager called Tigger, which can also work as a standalone tool.

[submitted]
MERA: Analysis Tool for Astrophysical Simulation Data in the Julia Language

MERA works with large 3D AMR/uniform-grid and N-body particle data sets from astrophysical simulations such as those produced by the hydrodynamic code RAMSES (ascl:1011.007) and is written entirely in the Julia language. The package provides essential functions for efficient and memory lightweight data loading and analysis. The core of MERA is a database framework.

[ascl:1511.020]
Mercury-T: Tidally evolving multi-planet systems code

Mercury-T calculates the evolution of semi-major axis, eccentricity, inclination, rotation period and obliquity of the planets as well as the rotation period evolution of the host body; it is based on the N-body code Mercury (Chambers 1999, ascl:1201.008). It is flexible, allowing computation of the tidal evolution of systems orbiting any non-evolving object (if its mass, radius, dissipation factor and rotation period are known), but also evolving brown dwarfs (BDs) of mass between 0.01 and 0.08 M⊙, an evolving M-dwarf of 0.1 M⊙, an evolving Sun-like star, and an evolving Jupiter.

[ascl:1201.008]
Mercury: A software package for orbital dynamics

Mercury is a new general-purpose software package for carrying out orbital integrations for problems in solar-system dynamics. Suitable applications include studying the long-term stability of the planetary system, investigating the orbital evolution of comets, asteroids or meteoroids, and simulating planetary accretion. Mercury is designed to be versatile and easy to use, accepting initial conditions in either Cartesian coordinates or Keplerian elements in "cometary" or "asteroidal" format, with different epochs of osculation for different objects. Output from an integration consists of osculating elements, written in a machine-independent compressed format, which allows the results of a calculation performed on one platform to be transferred (e.g. via FTP) and decoded on another.

During an integration, Mercury monitors and records details of close encounters, sungrazing events, ejections and collisions between objects. The effects of non-gravitational forces on comets can also be modeled. The package supports integrations using a mixed-variable symplectic routine, the Bulirsch-Stoer method, and a hybrid code for planetary accretion calculations.

[ascl:1305.015]
Merger Trees: Formation history of dark matter haloes

Merger Trees uses a Monte Carlo algorithm to generate merger trees describing the formation history of dark matter haloes; the algorithm is implemented in Fortran. The algorithm is a modification of the algorithm of Cole et al. used in the GALFORM semi-analytic galaxy formation model (ascl:1510.005) based on the Extended Press–Schechter theory. It should be applicable to hierarchical models with a wide range of power spectra and cosmological models. It is tuned to be in accurate agreement with the conditional mass functions found in the analysis of merger trees extracted from the Λ cold dark matter Millennium N-body simulation. The code should be a useful tool for semi-analytic models of galaxy formation and for modelling hierarchical structure formation in general.

[ascl:1010.083]
MESA: Modules for Experiments in Stellar Astrophysics

Stellar physics and evolution calculations enable a broad range of research in astrophysics. Modules for Experiments in Stellar Astrophysics (MESA) is a suite of open source libraries for a wide range of applications in computational stellar astrophysics. A newly designed 1-D stellar evolution module, MESA star, combines many of the numerical and physics modules for simulations of a wide range of stellar evolution scenarios ranging from very-low mass to massive stars, including advanced evolutionary phases. MESA star solves the fully coupled structure and composition equations simultaneously. It uses adaptive mesh refinement and sophisticated timestep controls, and supports shared memory parallelism based on OpenMP. Independently usable modules provide equation of state, opacity, nuclear reaction rates, and atmosphere boundary conditions. Each module is constructed as a separate Fortran 95 library with its own public interface. Examples include comparisons to other codes and show evolutionary tracks of very low mass stars, brown dwarfs, and gas giant planets; the complete evolution of a 1 Msun star from the pre-main sequence to a cooling white dwarf; the Solar sound speed profile; the evolution of intermediate mass stars through the thermal pulses on the He-shell burning AGB phase; the interior structure of slowly pulsating B Stars and Beta Cepheids; evolutionary tracks of massive stars from the pre-main sequence to the onset of core collapse; stars undergoing Roche lobe overflow; and accretion onto a neutron star.

[ascl:1709.003]
MeshLab: 3D triangular meshes processing and editing

MeshLab processes and edits 3D triangular meshes. It includes tools for editing, cleaning, healing, inspecting, rendering, texturing and converting meshes, and offers features for processing raw data produced by 3D digitization tools and devices and for preparing models for 3D printing.

[ascl:1612.012]
Meso-NH: Non-hydrostatic mesoscale atmospheric model

Meso-NH is the non-hydrostatic mesoscale atmospheric model of the French research community jointly developed by the Laboratoire d'Aérologie (UMR 5560 UPS/CNRS) and by CNRM (UMR 3589 CNRS/Météo-France). Meso-NH incorporates a non-hydrostatic system of equations for dealing with scales ranging from large (synoptic) to small (large eddy) scales while calculating budgets and has a complete set of physical parameterizations for the representation of clouds and precipitation. It is coupled to the surface model SURFEX for representation of surface atmosphere interactions by considering different surface types (vegetation, city, ocean, lake) and allows a multi-scale approach through a grid-nesting technique. Meso-NH is versatile, vectorized, parallelized, and operates in 1D, 2D or 3D; it is coupled with a chemistry module (including gas-phase, aerosol, and aqua-phase components) and a lightning module, and has observation operators that compare model output directly with satellite observations, radar, lidar and GPS.

[ascl:1111.009]
MESS: Multi-purpose Exoplanet Simulation System

Bonavita, M.; Chauvin, G.; Desidera, S.; Gratton, R.; Janson, M.; Beuzit, J. L.; Kasper, M.; Mordasini, C.

MESS is a Monte Carlo simulation IDL code which uses either the results of the statistical analysis of the properties of discovered planets, or the results of the planet formation theories, to build synthetic planet populations fully described in terms of frequency, orbital elements and physical properties. They can then be used to either test the consistency of their properties with the observed population of planets given different detection techniques or to actually predict the expected number of planets for future surveys. It can be used to probe the physical and orbital properties of a putative companion within the circumstellar disk of a given star and to test constrain the orbital distribution properties of a potential planet population around the members of the TW Hydrae association. Finally, using in its predictive mode, the synergy of future space and ground-based telescopes instrumentation has been investigated to identify the mass-period parameter space that will be probed in future surveys for giant and rocky planets. A Python version of this code, Exo-DMC (ascl:2010.008), is available.

[ascl:1205.010]
Meudon PDR: Atomic & molecular structure of interstellar clouds

The Meudon PDR code computes the atomic and molecular structure of interstellar clouds. It can be used to study the physics and chemistry of diffuse clouds, photodissociation regions (PDRs), dark clouds, or circumstellar regions. The model computes the thermal balance of a stationary plane-parallel slab of gas and dust illuminated by a radiation field and takes into account heating processes such as the photoelectric effect on dust, chemistry, cosmic rays, etc. and cooling resulting from infrared and millimeter emission of the abundant species. Chemistry is solved for any number of species and reactions. Once abundances of atoms and molecules and level excitation of the most important species have been computed at each point, line intensities and column densities can be deduced.

[ascl:1907.031]
MGB: Interactive spectral classification code

MGB (Marxist Ghost Buster) attacks spectral classification by using an interactive comparison with spectral libraries. It allows the user to move along the two traditional dimensions of spectral classification (spectral subtype and luminosity classification) plus the two additional ones of rotation index and spectral peculiarities. Double-lined spectroscopic binaries can also be fitted using a combination of two standards. The code includes OB2500 v2.0, a standard grid of blue-violet *R* ~ 2500 spectra of O stars from the Galactic O-Star Spectroscopic Survey, but other grids can be added to MGB.

[ascl:1106.013]
MGCAMB: Modification of Growth with CAMB

CAMB is a public Fortran 90 code written by Antony Lewis and Anthony Challinor for evaluating cosmological observables. MGCAMB is a modified version of CAMB in which the linearized Einstein equations of General Relativity (GR) are modified. MGCAMB can also be used in CosmoMC to fit different modified-gravity (MG) models to data.

[ascl:1403.017]
MGE_FIT_SECTORS: Multi-Gaussian Expansion fits to galaxy images

MGE_FIT_SECTORS performs Multi-Gaussian Expansion (MGE) fits to galaxy images. The MGE parameterizations are useful in the construction of realistic dynamical models of galaxies, PSF deconvolution of images, the correction and estimation of dust absorption effects, and galaxy photometry. The algorithm is well suited for use with multiple-resolution images (e.g. Hubble Space Telescope (HST) and ground-based images).

[ascl:1010.081]
MGGPOD: A Monte Carlo Suite for Gamma-Ray Astronomy

We have developed MGGPOD, a user-friendly suite of Monte Carlo codes built around the widely used GEANT (Version 3.21) package. The MGGPOD Monte Carlo suite and documentation are publicly available for download. MGGPOD is an ideal tool for supporting the various stages of gamma-ray astronomy missions, ranging from the design, development, and performance prediction through calibration and response generation to data reduction. In particular, MGGPOD is capable of simulating ab initio the physical processes relevant for the production of instrumental backgrounds. These include the build-up and delayed decay of radioactive isotopes as well as the prompt de-excitation of excited nuclei, both of which give rise to a plethora of instrumental gamma-ray background lines in addition to continuum backgrounds.

[ascl:1402.035]
MGHalofit: Modified Gravity extension of Halofit

MGHalofit is a modified gravity extension of the fitting formula for the matter power spectrum of HALOFIT and its improvement by Takahashi et al. MGHalofit is implemented in MGCAMB, which is based on CAMB. MGHalofit calculates the nonlinear matter power spectrum P(k) for the Hu-Sawicki model. Comparing MGHalofit predictions at various redshifts (z<=1) to the f(R) simulations, the accuracy on P(k) is 6% at k<1 h/Mpc and 12% at 1<k<10 h/Mpc respectively.

[ascl:1511.007]
MHF: MLAPM Halo Finder

MHF is a Dark Matter halo finder that is based on the refinement grids of MLAPM. The grid structure of MLAPM adaptively refines around high-density regions with an automated refinement algorithm, thus naturally "surrounding" the Dark Matter halos, as they are simply manifestations of over-densities within (and exterior) to the underlying host halo. Using this grid structure, MHF restructures the hierarchy of nested isolated MLAPM grids into a "grid tree". The densest cell in the end of a tree branch marks center of a prospective Dark Matter halo. All gravitationally bound particles about this center are collected to obtain the final halo catalog. MHF automatically finds halos within halos within halos.

[ascl:1205.003]
MIA+EWS: MIDI data reduction tool

MIA+EWS is a package of two data reduction tools for MIDI data which uses power-spectrum analysis or the information contained in the spectrally-dispersed fringe measurements in order to estimate the correlated flux and the visibility as function of wavelength in the N-band. MIA, which stands for MIDI Interactive Analysis, uses a Fast Fourier Transformation to calculate the Fourier amplitudes of the fringe packets to calculate the correlated flux and visibility. EWS stands for Expert Work-Station, which is a collection of IDL tools to apply coherent visibility analysis to reduce MIDI data. The EWS package allows the user to control and examine almost every aspect of MIDI data and its reduction. The usual data products are the correlated fluxes, total fluxes and differential phase.

[ascl:2005.002]
michi2: SED and SLED fitting tool

michi2 fits combinations of arbitrary numbers of libraries/components to a given observational data. Written in C++ and Python, this chi-square fitting tool can fit a galaxy's spectral energy distribution (SED) with stellar, active galactic nuclear, dust and radio SED templates, and fit a galaxy's spectral line energy distribution (SLED) with one or more gas components using radiative transfer LVG model grid libraries.

michi2 first samples the high-dimensional parameter space (N1*N2*N3*..., where N is the number of independent templates in each library, and 1/2/3 is the ID of components) in an optimized way for a few thousand or tens of thousand times to compute the chi-square to the input observational data, then uses Python scripts to analyze the chi-square distribution and derive the best-fit, median, lower and higher 1-sigma values for each parameter in each library/component. This tool is useful for fitting larger number of templates and arbitrary combinations of libraries/components, including some constraining of one library/component onto another.

[ascl:1011.017]
Microccult: Occultation and Microlensing

Occultation and microlensing are different limits of the same phenomena of one body passing in front of another body. We derive a general exact analytic expression which describes both microlensing and occultation in the case of spherical bodies with a source of uniform brightness and a non-relativistic foreground body. We also compute numerically the case of a source with quadratic limb-darkening. In the limit that the gravitational deflection angle is comparable to the angular size of the foreground body, both microlensing and occultation occur as the objects align. Such events may be used to constrain the size ratio of the lens and source stars, the limb-darkening coefficients of the source star, and the surface gravity of the lens star (if the lens and source distances are known). Application of these results to microlensing during transits in binaries and giant-star microlensing are discussed. These results unify the microlensing and occultation limits and should be useful for rapid model fitting of microlensing, eclipse, and "microccultation" events.

[ascl:1303.007]
micrOMEGAs: Calculation of dark matter properties

micrOMEGAs calculates the properties of cold dark matter in a generic model of particle physics. First developed to compute the relic density of dark matter, the code also computes the rates for dark matter direct and indirect detection. The code provides the mass spectrum, cross-sections, relic density and exotic fluxes of gamma rays, positrons and antiprotons. The propagation of charged particles in the Galactic halo is handled with a module that allows to easily modify the propagation parameters. The cross-sections for both spin dependent and spin independent interactions of WIMPS on protons are computed automatically as well as the rates for WIMP scattering on nuclei in a large detector. Annihilation cross-sections of the dark matter candidate at zero velocity, relevant for indirect detection of dark matter, are computed automatically, and the propagation of charged particles in the Galactic halo is also handled.

[ascl:1010.008]
midIR_sensitivity: Mid-infrared astronomy with METIS

Kendrew, Sarah; Jolissaint, Laurent; Brandl, Bernhard; Lenzen, Rainer; Pantin, Eric; Glasse, Alistair; Blommaert, Joris; Venema, Lars; Siebenmorgen, Ralf; Molster, Frank

midIR_sensitivity is IDL code that calculates the sensitivity of a ground-based mid-infrared instrument for astronomy. The code was written for the Phase A study of the instrument METIS (http://www.strw.leidenuniv.nl/metis), the Mid-Infrared E-ELT Imager and Spectrograph, for the 42-m European Extremely Large Telescope. The model uses a detailed set of input parameters for site characteristics and atmospheric profiles, optical design, and thermal background. The code and all input parameters are highly tailored for the particular design parameters of the E-ELT and METIS, however, the program is structured in such a way that the parameters can easily be adjusted for a different system, or alternative input files used.

[ascl:1807.016]
MIDLL: Markwardt IDL Library

The Markwardt IDL Library contains routines for curve fitting and function minimization, including MPFIT (ascl:1208.019), statistical tests, and non-linear optimization (TNMIN); graphics programs including plotting three-dimensional data as a cube and fixed- or variable-width histograms; adaptive numerical integration (Quadpack), Chebyshev approximation and interpolation, and other mathematical tools; many ephemeris and timing routines; and array and set operations, such as computing the fast product of a large array, efficiently inserting or deleting elements in an array, and performing set operations on numbers and strings; and many other useful and varied routines.

[ascl:1810.019]
MIEX: Mie scattering code for large grains

Miex calculates Mie scattering coefficients and efficiency factors for broad grain size distributions and a very wide wavelength range (λ ≈ 10-10-10-2m) of the interacting radiation and incorporates standard solutions of the scattering amplitude functions. The code handles arbitrary size parameters, and single scattering by particle ensembles is calculated by proper averaging of the respective parameters.

[ascl:1511.012]
milkywayproject_triggering: Correlation functions for two catalog datasets

This triggering code calculates the correlation function between two astrophysical data catalogs using the Landy-Szalay approximator generalized for heterogeneous datasets (Landy & Szalay, 1993; Bradshaw et al, 2011) or the auto-correlation function of one dataset. It assumes that one catalog has positional information as well as an object size (effective radius), and the other only positional information.

[ascl:1811.010]
MillCgs: Searching for Compact Groups in the Millennium Simulation

MillCgs clusters galaxies from the semi-analytic models run on top of the Millennium Simulation to identify Compact Groups. MillCgs uses a machine learning clustering algorithm to find the groups and then runs analytics to filter out the groups that do not fit the user specified criteria. The package downloads the data, processes it, and then creates graphs of the data.

[ascl:2108.005]
millennium-tap-query: Python tool to query the Millennium Simulation UWS/TAP client

millennium-tap-query is a simple wrapper for the Python package requests to deal with connections to the Millennium TAP Web Client. With this tool you can perform basic or advanced queries to the Millennium Simulation database and download the data products. millennium-tap-query is similar to the TAP query tool in the German Astrophysical Virtual Observatory (GAVO) VOtables package.

[ascl:0101.001]
MILLISEARCH: A Search for Millilensing in BATSE GRB Data

The millisearch.for code was used to generate a new search for the gravitational lens effects of a significant cosmological density of supermassive compact objects (SCOs) on gamma-ray bursts. No signal attributable to millilensing was found. We inspected the timing data of 774 BATSE-triggered GRBs for evidence of millilensing: repeated peaks similar in light-curve shape and spectra. Our null detection leads us to conclude that, in all candidate universes simulated, Omega_{SCO} < 0.1 is favored for 10^{5} < M_{SCO}/M_{odot} < 10^{9}, while in some universes and mass ranges the density limits are as much as 10 times lower. Therefore, a cosmologically significant population of SCOs near globular cluster mass neither came out of the primordial universe, nor condensed at recombination.

[ascl:1911.023]
miluphcuda: Smooth particle hydrodynamics code

Schaefer, Christoph M.; Riecker, Sven; Wandel, Oliver; Maindl, Thomas I.; Scherrer, Samuel; Werner, Janka; Burger, Christoph; Morlock, Marius

miluphcuda is the CUDA port of the original miluph code; it runs on single Nvidia GPUs with compute capability 5.0 and higher and provides fast and efficient computation. The code can be used for hydrodynamical simulations and collision and impact physics, and features self-gravity via Barnes-Hut trees and porosity models such as P-alpha and epsilon-alpha. It can model solid bodies, including ductile and brittle materials, as well as non-viscous fluids, granular media, and porous continua.

[ascl:2001.001]
Min-CaLM: Mineral compositional analysis on debris disk spectra

Min-CaLM performs automated mineral compositional analysis on debris disk spectra. The user inputs the debris disk spectrum, and using Min-CaLM's built-in mineralogical library, Min-CaLM calculates the relative mineral abundances within the disk. To do this calculation, Min-CaLM converts the debris disk spectrum and the mineralogical library spectra into a system of linear equations, which it then solves using non-negative least square minimization. This code comes with a GitHub tutorial on how to use the Min-CaLM package.

[ascl:1302.006]
Minerva: Cylindrical coordinate extension for Athena

Minerva is a cylindrical coordinate extension of the Athena astrophysical MHD code of Stone, Gardiner, Teuben, and Hawley. The extension follows the approach of Athena's original developers and has been designed to alter the existing Cartesian-coordinates code as minimally and transparently as possible. The numerical equations in cylindrical coordinates are formulated to maintain consistency with constrained transport (CT), a central feature of the Athena algorithm, while making use of previously implemented code modules such as the Riemann solvers. Angular momentum transport, which is critical in astrophysical disk systems dominated by rotation, is treated carefully.

[ascl:2009.012]
minot: Modeling framework for diffuse components in galaxy clusters

Adam, R.; Goksu, H.; Leingärtner-Goth, A.; Ettori, S.; Gnatyk, R.; Hnatyk, B.; Hütten, M.; Pérez-Romero, J.; Sánchez-Conde, M. A.; Sergijenko, O.

minot (Modeling of the ICM (Non-)thermal content and Observables prediction Tools) provides a self-consistent modeling framework for the thermal and non-thermal diffuse components in galaxy clusters and predictions multi-wavelength observables. The framework sets or modifies the cluster object according to set parameters and defines the physical and observational properties, which can include thermal gas and CR physics, tSZ, inverse Compton, and radio synchotron. minot then generates outputs, including model parameters, plots, and relationships between models.

[submitted]
MiraPy: Python package for Deep Learning in Astronomy

MiraPy is a Python package for problem-solving in astronomy using Deep Learning for astrophysicist, researchers and students. Current applications of MiraPy are X-Ray Binary classification, ATLAS variable star feature classification, OGLE variable star light-curve classification, HTRU1 dataset classification and Astronomical image reconstruction using encoder-decoder network. It also contains modules for loading various datasets, curve-fitting, visualization and other utilities. It is built using Keras for developing ML models to run on CPU and GPU seamlessly.

[ascl:1106.007]
MIRIAD: Multi-channel Image Reconstruction, Image Analysis, and Display

MIRIAD is a radio interferometry data-reduction package, designed for taking raw visibility data through calibration to the image analysis stage. It has been designed to handle any interferometric array, with working examples for BIMA, CARMA, SMA, WSRT, and ATCA. A separate version for ATCA is available, which differs in a few minor ways from the CARMA version.

[ascl:2102.017]
mirkwood: SED modeling using machine learning

mirkwood uses supervised machine learning to model non-linearly mapping galaxy fluxes to their properties. Multiple models are stacked to mitigate poor performance by any individual model in a given region of the parameter space. The code accounts for uncertainties arising both from intrinsic noise in observations and from finite training data and incorrect modeling assumptions, and provides highly accurate physical properties from observations of galaxies as compared to traditional SED fitting.

[ascl:1110.025]
MIS: A Miriad Interferometry Singledish Toolkit

MIS is a pipeline toolkit using the package MIRIAD to combine Interferometric and Single Dish data. This was prompted by our observations made with the Combined Array For Research in Millimeter-wave Astronomy (CARMA) interferometer of the star-forming region NGC 1333, a large survey highlighting the new 23-element and singledish observing modes. The project consists of 20 CARMA datasets each containing interferometric as well as simultaneously obtained single dish data, for 3 molecular spectral lines and continuum, in 527 different pointings, covering an area of about 8 by 11 arcminutes. A small group of collaborators then shared this toolkit and their parameters via CVS, and scripts were developed to ensure uniform data reduction across the group. The pipeline was run end-to-end each night that new observations were obtained, producing maps that contained all the data to date. This approach could serve as a model for repeated calibration and mapping of large mixed-mode correlation datasets from ALMA.

[ascl:1010.062]
MissFITS: Basic Maintenance and Packaging Tasks on FITS Files

MissFITS is a program that performs basic maintenance and packaging tasks on FITS files using an optimized FITS library. MissFITS can:

- add, edit, and remove FITS header keywords;
- split and join Multi-Extension-FITS (MEF) files;
- unpile and pile FITS data-cubes; and,
- create, check, and update FITS checksums, using R. Seaman’s protocol.

[ascl:1505.011]
missForest: Nonparametric missing value imputation using random forest

missForest imputes missing values particularly in the case of mixed-type data. It uses a random forest trained on the observed values of a data matrix to predict the missing values. It can be used to impute continuous and/or categorical data including complex interactions and non-linear relations. It yields an out-of-bag (OOB) imputation error estimate without the need of a test set or elaborate cross-validation and can be run in parallel to save computation time. missForest has been used to, among other things, impute variable star colors in an All-Sky Automated Survey (ASAS) dataset of variable stars with no NOMAD match.

[ascl:1910.016]
MiSTree: Construct and analyze Minimum Spanning Tree graphs

MiSTree quickly constructs minimum spanning tree graphs for various coordinate systems, including Celestial coordinates, by using a k-nearest neighbor graph (k NN, rather than a matrix of pairwise distances) which is then fed to Kruskal's algorithm to create the graph. MiSTree bins the MST statistics into histograms and plots the distributions; enabling the inclusion of high-order statistics information from the cosmic web to provide additional information that improves cosmological parameter constraints. Though MiSTree was designed for use in cosmology, it can be used in any field requiring extracting non-Gaussian information from point distributions.

[ascl:1409.001]
mixT: single-temperature fit for a multi-component thermal plasma

mixT accurately predicts T derived from a single-temperature fit for a multi-component thermal plasma. It can be applied in the deprojection analysis of objects with the temperature and metallicity gradients, for correction of the PSF effects, for consistent comparison of numerical simulations of galaxy clusters and groups with the X-ray observations, and for estimating how emission from undetected components can bias the global X-ray spectral analysis.

[ascl:1206.010]
mkj_libs: Helper routines for plane-fitting & analysis tools

mkj_libs provides a set of helper routines (vector operations, astrometry, statistical analysis of spherical data) for the main plane-fitting and analysis tools.

[ascl:0104.001]
MLAPM: Simulating Structure Formation from Collisionless Matter

MLAPM simulates structure formation from collisionless matter. The code, written in C, is purely grid-based and uses a recursively refined Cartesian grid to solve Poisson's equation for the potential, rather than obtaining the potential from a Green's function. Refinements can have arbitrary shapes and in practice closely follow the complex morphology of the density field that evolves. The timestep shortens by a factor two with each successive refinement. It is argued that an appropriate choice of softening length is of great importance and that the softening should be at all points an appropriate multiple of the local inter-particle separation. Unlike tree and P3M codes, multigrid codes automatically satisfy this requirement.

[ascl:2012.005]
MLC_ELGs: Machine Learning Classifiers for intermediate redshift Emission Line Galaxies

Zhang, Kai; Schlegel, David J.; Andrews, Brett H.; Comparat, Johan; Schäfer, Christoph; Vazquez Mata, Jose Antonio; Kneib, Jean-Paul; Yan, Renbin

MLC_EPGs classifies intermediate redshift (z = 0.3–0.8) emission line galaxies as star-forming galaxies, composite galaxies, active galactic nuclei (AGN), or low-ionization nuclear emission regions (LINERs). It uses four supervised machine learning classification algorithms: k-nearest neighbors (KNN), support vector classifier (SVC), random forest (RF), and a multi-layer perceptron (MLP) neural network. For input features, it uses properties that can be measured from optical galaxy spectra out to z < 0.8—[O III]/Hβ, [O II]/Hβ, [O III] line width, and stellar velocity dispersion—and four colors (u−g, g−r, r−i, and i−z) corrected to z = 0.1.

[ascl:2009.010]
MLG: Microlensing with Gaia

MLG simulates Gaia measurements for predicted astrometric microlensing events. It fits the motion of the lens and source simultaneously and reconstructs the 11 parameters of the lensing event. For lenses passing by multiple background sources, it also fits the motion of all background sources and the lens simultaneously. A Monte-Carlo simulation is used to determine the achievable precision of the mass determination.

[ascl:1403.003]
MLZ: Machine Learning for photo-Z

The parallel Python framework MLZ (Machine Learning and photo-Z) computes fast and robust photometric redshift PDFs using Machine Learning algorithms. It uses a supervised technique with prediction trees and random forest through TPZ that can be used for a regression or a classification problem, or a unsupervised methods with self organizing maps and random atlas called SOMz. These machine learning implementations can be efficiently combined into a more powerful one resulting in robust and accurate probability distributions for photometric redshifts.

[ascl:1412.010]
MMAS: Make Me A Star

Make Me A Star (MMAS) quickly generates stellar collision remnants and can be used in combination with realistic dynamical simulations of star clusters that include stellar collisions. The code approximates the merger process (including shock heating, hydrodynamic mixing, mass ejection, and angular momentum transfer) with simple algorithms based on conservation laws and a basic qualitative understanding of the hydrodynamics. These simple models agree very well with those from SPH (smoothed particle hydrodynamics) calculations of stellar collisions, and the subsequent stellar evolution of these models also matches closely that of the more accurate hydrodynamic models.

[ascl:1905.005]
MMIRS-DRP: MMIRS Data Reduction Pipeline

The MMIRS data reduction pipeline provides complete and flexible data reduction for long-slit and multi-slit spectroscopic observations collected using the MMT and Magellan Infrared Spectrograph (MMIRS). Written in IDL, it offers sky subtraction, correction for telluric absorpition, and is fast enough to permit real-time data reduction for quality control.

[ascl:2104.012]
Mo'Astro: MongoDB framework for observational astronomy

Mo’Astro is a MongoDB framework for observational astronomy pipelines. Mo'Astro sets up a MongoDB collection of a survey's image set, keeping FITS metadata readily available, and providing a place in the reduction pipeline to persist metadata. Mo’Astro also provides facilities for batch processing images with the Astromatic tool suite, and for hosting a local 2MASS star catalog with spatial-search built-in.

[ascl:1110.010]
MOCASSIN: MOnte CArlo SimulationS of Ionized Nebulae

MOCASSIN is a fully 3D or 2D photoionisation and dust radiative transfer code which employs a Monte Carlo approach to the transfer of radiation through media of arbitrary geometry and density distribution. Written in Fortran, it was originally developed for the modelling of photoionised regions like HII regions and planetary nebulae and has since expanded and been applied to a variety of astrophysical problems, including modelling clumpy dusty supernova envelopes, star forming galaxies, protoplanetary disks and inner shell fluorence emission in the photospheres of stars and disk atmospheres. The code can deal with arbitrary Cartesian grids of variable resolution, it has successfully been used to model complex density fields from SPH calculations and can deal with ionising radiation extending from Lyman edge to the X-ray. The dust and gas microphysics is fully coupled both in the radiation transfer and in the thermal balance.

[ascl:2106.025]
ModeChord: Primordial scalar and tensor power spectra solver

Mortonson, Michael J.; Peiris, Hiranya V.; Easther, Richard; Noreña, Jorge; Wagner, Christian; Verde, Licia; Handley, Will

ModeChord computes the primordial scalar and tensor power spectra for single field inflationary models. The code solves the inflationary mode equations numerically, avoiding the slow roll approximation. It provides an efficient and robust numerical evaluation of the inflationary perturbation spectrum, and allows the free parameters in the inflationary potential to be estimated. ModeChord also allows the estimation of reheating uncertainties once a potential has been specified.

[ascl:1010.009]
ModeCode: Bayesian Parameter Estimation for Inflation

ModeCode is a publicly available code that computes the primordial scalar and tensor power spectra for single field inflationary models. ModeCode solves the inflationary mode equations numerically, avoiding the slow roll approximation. It provides an efficient and robust numerical evaluation of the inflationary perturbation spectrum, and allows the free parameters in the inflationary potential to be estimated within an MCMC computation. ModeCode also allows the estimation of reheating uncertainties once a potential has been specified. It is interfaced with CAMB and CosmoMC to compute cosmic microwave background angular power spectra and perform likelihood analysis and parameter estimation. It can be run as a standalone code as well. Errors in the results from ModeCode contribute negligibly to the error budget for analyses of data from Planck or other next generation experiments.

[ascl:1109.023]
MOKA: A New Tool for Strong Lensing Studies

MOKA simulates the gravitational lensing signal from cluster-sized haloes. This algorithm implements recent results from numerical simulations to create realistic lenses with properties independent of numerical resolution and can be used for studies of the strong lensing cross section in dependence of halo structure.

[ascl:1501.013]
Molecfit: Telluric absorption correction tool

Smette, A.; Kausch, W; Sana, H; Noll, S.; Horst, H.; Kimeswenger, S.; Barden, M; Szyszka, C.; Jones, A. M.; Gallene, A.; Vinther, J.; Ballester, P.; Kerber, F.

Molecfit corrects astronomical observations for atmospheric absorption features based on fitting synthetic transmission spectra to the astronomical data, which saves a significant amount of valuable telescope time and increases the instrumental efficiency. Molecfit can also estimate molecular abundances, especially the water vapor content of the Earth’s atmosphere. The tool can be run from a command-line or more conveniently through a GUI.

[ascl:1212.004]
MOLIERE-5: Forward and inversion model for sub-mm wavelengths

MOLIERE-5 (Microwave Observation LIne Estimation and REtrieval) is a versatile forward and inversion model for the millimeter and submillimeter wavelengths range and includes an inversion model. The MOLIERE-5 forward model includes modules for the calculation of absorption coefficients, radiative transfer, and instrumental characteristics. The radiative transfer model is supplemented by a sensitivity module for estimating the contribution to the spectrum of each catalog line at its center frequency enabling the model to effectively filter for small spectral lines. The instrument model consists of several independent modules, including the calculation of the convolution of spectra and weighting functions with the spectrometer response functions. The instrument module also provides several options for modeling of frequency-switched observations. The MOLIERE-5 inversion model calculates linear Optimal Estimation, a least-squares retrieval method which uses statistical apriori knowledge on the retrieved parameters for the regularization of ill-posed inversion problems and computes diagnostics such as the measurement and smoothing error covariance matrices along with contribution and averaging kernel functions.

[ascl:1907.012]
molly: 1D astronomical spectra analyzer

molly analyzes 1D astronomical spectra. Its prime purpose is for handling large numbers of similar spectra (*e.g.,* time series spectroscopy), but it contains many of the standard operations used for normal spectrum analysis as well. It overlaps with the various similar programs such as dipso (ascl:1405.016) and has strengths (particularly for time series spectra) and weaknesses compared to them.

[ascl:1206.004]
MOLSCAT: MOLecular SCATtering v. 14

MOLSCAT version 14 is a FORTRAN code for quantum mechanical (coupled channel) solution of the nonreactive molecular scattering problem and was developed to obtain collision rates for molecules in the interstellar gas which are needed to understand microwave and infrared astronomical observations. The code is implemented for various types of collision partners. In addition to the essentially exact close coupling method several approximate methods, including the Coupled States and Infinite Order Sudden approximations, are provided. This version of the code has been superseded by MOLSCAT 2020 (ascl:2010.001).

[ascl:1908.002]
Molsoft: Molonglo Telescope Observing Software

Molsoft operates, monitors and schedules observations, both through predetermined schedule files and fully dynamically, at the refurbished Molonglo Observatory Synthesis Radio Telescope (MOST). It was developed as part of the UTMOST upgrade of the facility. The software runs a large-scale pulsar timing program; the autonomous observing system and the dynamic scheduler have increased the observing efficiency by a factor of 2-3 in comparison with static scheduling.

[ascl:1010.036]
Montage: An Astronomical Image Mosaicking Toolkit

Jacob, Joseph C.; Katz, Daniel S.; Berriman, G. Bruce; Good, John; Laity, Anastasia C.; Deelman, Ewa; Kesselman, Carl; Singh, Gurmeet; Su, Mei-Hui; Prince, Thomas A.; Williams, Roy

Montage is an open source code toolkit for assembling Flexible Image Transport System (FITS) images into custom mosaics. It runs on all common Linux/Unix platforms, on desktops, clusters and computational grids, and supports all World Coordinate System (WCS) projections and common coordinate systems. Montage preserves spatial and calibration fidelity of input images, processes 40 million pixels in up to 32 minutes on 128 nodes on a Linux cluster, and provides independent engines for analyzing the geometry of images on the sky, re-projecting images, rectifying background emission to a common level, and co-adding images. It offers convenient tools for managing and manipulating large image files.

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