Results 1501-1600 of 3562 (3469 ASCL, 93 submitted)

[ascl:1409.005]
IFSFIT: Spectral Fitting for Integral Field Spectrographs

IFSFIT is a general-purpose IDL library for fitting the continuum, emission lines, and absorption lines in integral field spectra. It uses PPXF (ascl:1210.002) to find the best fit stellar continuum (using a user-defined library of stellar templates and including additive polynomials), or optionally a user-defined method to find the best fit continuum. It uses MPFIT (ascl:1208.019) to simultaneously fit Gaussians to any number of emission lines and emission line velocity components. It will also fit the NaI D feature using analytic absorption and/or emission-line profiles.

[ascl:1409.004]
IFSRED: Data Reduction for Integral Field Spectrographs

IFSRED is a general-purpose library for reducing data from integral field spectrographs (IFSs). For a general IFS data cube, it contains IDL routines to: (1) find and apply a zero-point shift in a wavelength solution on a spaxel-by-spaxel basis, using sky lines; (2) find the spatial coordinates of a flux peak; (3) empirically correct for differential atmospheric refraction; (4) mosaic dithered exposures; (5) (integer) rebin; and (6) apply a telluric correction. A sky-subtraction routine for data from the Gemini Multi-Object Spectrograph and Imager (GMOS) that can be easily modified for any instrument is also included. IFSRED also contains additional software specific to reducing data from GMOS and the Gemini Near-Infrared Integral Field Spectrograph (NIFS).

[ascl:1110.003]
iGalFit: An Interactive Tool for GalFit

The iGalFit suite of IDL routines interactively runs GALFIT whereby the various surface brightness profiles (and their associated parameters) are represented by regions, which the user is expected to place. The regions may be saved and/or loaded from the ASCII format used by ds9 or in the Hierarchical Data Format (version 5). The software has been tested to run stably on Mac OS X and Linux with IDL 7.0.4. In addition to its primary purpose of modeling galaxy images with GALFIT, this package has several ancillary uses, including a flexible image display routines, several basic photometry functions, and qualitatively assessing Source Extractor.

[ascl:1101.003]
IGMtransfer: Intergalactic Radiative Transfer Code

This document describes the publically available numerical code "IGMtransfer", capable of performing intergalactic radiative transfer (RT) of light in the vicinity of the Lyman alpha (Lya) line. Calculating the RT in a (possibly adaptively refined) grid of cells resulting from a cosmological simulation, the code returns 1) a "transmission function", showing how the intergalactic medium (IGM) affects the Lya line at a given redshift, and 2) the "average transmission" of the IGM, making it useful for studying the results of reionization simulations.

[ascl:1504.015]
IGMtransmission: Transmission curve computation

IGMtransmission is a Java graphical user interface that implements Monte Carlo simulations to compute the corrections to colors of high-redshift galaxies due to intergalactic attenuation based on current models of the Intergalactic Medium. The effects of absorption due to neutral hydrogen are considered, with particular attention to the stochastic effects of Lyman Limit Systems. Attenuation curves are produced, as well as colors for a wide range of filter responses and model galaxy spectra. Photometric filters are included for the Hubble Space Telescope, the Keck telescope, the Mt. Palomar 200-inch, the SUBARU telescope and UKIRT; alternative filter response curves and spectra may be readily uploaded.

[ascl:2210.013]
iharm3D: Hybrid MPI/OpenMP 3D HARM with vectorization

Prather, Ben; Wong, George; Dhruv, Vedant; Ryan, Benjamin; Dolence, Joshua; Ressler, Sean; Gammie, Charles

iharm3D implements the HARM algorithm (ascl:1209.005) with modifications and enables a second-order, conservative, shock-capturing scheme for general-relativistic magnetohydrodynamics (GRMHD). Written in C, it simulates black hole accretion systems in arbitrary stationary spacetimes.

[ascl:1408.009]
IIPImage: Large-image visualization

IIPImage is an advanced high-performance feature-rich image server system that enables online access to full resolution floating point (as well as other bit depth) images at terabyte scales. Paired with the VisiOmatic (ascl:1408.010) celestial image viewer, the system can comfortably handle gigapixel size images as well as advanced image features such as both 8, 16 and 32 bit depths, CIELAB colorimetric images and scientific imagery such as multispectral images. Streaming is tile-based, which enables viewing, navigating and zooming in real-time around gigapixel size images. Source images can be in either TIFF or JPEG2000 format. Whole images or regions within images can also be rapidly and dynamically resized and exported by the server from a single source image without the need to store multiple files in various sizes.

[ascl:2004.003]
IllinoisGRMHD: GRMHD code for dynamical spacetimes

IllinoisGRMHD is an open-source, highly-extensible rewrite of the original closed-source general relativistic (ideal) magnetohydrodynamics (GRMHD) code of the Illinois Numerical Relativity (ILNR) Group. Reducing the learning curve was the primary focus of this rewrite, with the goal of facilitating community involvement in the code's use and development, as well as reducing the human effort necessary to generate new science. IllinoisGRMHD also saves computer time, generating roundoff-precision identical output to the original code on adaptive-mesh grids while being nearly twice as fast at scales of hundreds to thousands of cores.

[ascl:1307.006]
im2shape: Bayesian Galaxy Shape Estimation

im2shape is a Bayesian approach to the problem of accurate measurement of galaxy ellipticities for weak lensing studies, in particular cosmic shear. im2shape parameterizes galaxies as sums of Gaussians, convolved with a psf which is also a sum of Gaussians. The uncertainties in the output parameters are calculated using a Markov Chain Monte Carlo approach.

[ascl:1409.013]
IM3SHAPE: Maximum likelihood galaxy shear measurement code for cosmic gravitational lensing

Im3shape forward-fits a galaxy model to each data image it is supplied with and reports the parameters of the best fitting model, including the ellipticity components. It uses the Discrete Fourier Transform (DFT) to render images of convolved galaxy profiles, calculates the maximum likelihood parameter values, and corrects for noise bias. IM3SHAPE is a modular C code with a significant amount of Python glue code to enable setting up new models and their options automatically.

[ascl:1206.014]
ImageHealth: Quality Assurance for Large FITS Images

ImageHealth (IH) is a c program that makes use of standard CFITSIO routines to examine, in an automated fashion, .FITS images with any number of extensions, find objects within those images, and determine basic parameters of those images (stellar flux, background counts, FWHM, and ellipticity, along with sky background counts) in order to provide a snapshot of the quality of those images. A variety of python wrappers have also been written to test large numbers of such images and compare the results of ImageHealth to other image analysis programs, such as SourceExtractor. Additional IH-related tools will be made available in the future.

[ascl:1206.013]
ImageJ: Image processing and analysis in Java

ImageJ is a public domain Java image processing program inspired by NIH Image. It can display, edit, analyze, process, save and print 8-bit, 16-bit and 32-bit images. It can read many image formats including TIFF, GIF, JPEG, BMP, DICOM, FITS and "raw". It supports "stacks", a series of images that share a single window. It is multithreaded, so time-consuming operations such as image file reading can be performed in parallel with other operations.

[ascl:1803.007]
IMAGINE: Interstellar MAGnetic field INference Engine

IMAGINE (Interstellar MAGnetic field INference Engine) performs inference on generic parametric models of the Galaxy. The modular open source framework uses highly optimized tools and technology such as the MultiNest sampler (ascl:1109.006) and the information field theory framework NIFTy (ascl:1302.013) to create an instance of the Milky Way based on a set of parameters for physical observables, using Bayesian statistics to judge the mismatch between measured data and model prediction. The flexibility of the IMAGINE framework allows for simple refitting for newly available data sets and makes state-of-the-art Bayesian methods easily accessible particularly for random components of the Galactic magnetic field.

[ascl:2307.033]
Imber: Doppler imaging tool for modeling stellar and substellar surfaces

Imber simulates spectroscopic and photometric observations with both a gridded numerical simulation and analytical model. Written in Python, it is specifically designed to predict Extremely Large Telescope instrument (such as ELT/METIS and TMT/MODHIS) Doppler imaging performance, and has also been applied to existing, archival observations of spectroscopy and photometry.

[ascl:1108.001]
IMCAT: Image and Catalogue Manipulation Software

The IMCAT software was developed initially to do faint galaxy photometry for weak lensing studies, and provides a fairly complete set of tools for this kind of work. Unlike most packages for doing data analysis, the tools are standalone unix commands which you can invoke from the shell, via shell scripts or from perl scripts. The tools are arranges in a tree of directories. One main branch is the ’imtools’. These deal only with fits files. The most important imtool is the ’image calculator’ ’ic’ which allows one to do rather general operations on fits images. A second branch is the ’catools’ which operate only on catalogues. The key cattool is ’lc’; this effectively defines the format of IMCAT catalogues, and allows one to do very general operations on and filtering of such catalogues. A third branch is the ’imcattools’. These tend to be much more specialised than the cattools and imcattools and are focussed on faint galaxy photometry.

[ascl:1312.003]
IMCOM: IMage COMbination

IMCOM allows for careful treatment of aliasing in undersampled imaging data and can be used to test the feasibility of multi-exposure observing strategies for space-based survey missions. IMCOM can also been used to explore focal plane undersampling for an optical space mission such as Euclid.

[ascl:2203.004]
imexam: IMage EXAMination and plotting

Sosey, Megan; Bradley, Larry; Sipőcz, Brigitta; Yoachim, Peter; Jeschke, Eric; Lim, P. L.; Tollerud, Erik; Craig, Matt; Bray, E. M.; Kurtz, Heather; Soref, Josh; Robitaille, Thomas; Hoyt, Taylor; Deil, Christoph; Eisenhamer, Jonathan

imexam performs simple image examination and plotting, with similar functionality to IRAF's (ascl:9911.002) imexamine. It is a lightweight library that enables users to explore data from a command line interface, through a Jupyter notebook, or through a Jupyter console. imexam can be used with multiple viewers, such as DS9 (scl:0003.002) or Ginga (ascl:1303.020), or without a viewer as a simple library to make plots and grab quick photometry information. It has been designed so that other viewers may be easily attached in the future.

[ascl:1408.001]
Imfit: A Fast, Flexible Program for Astronomical Image Fitting

Imfit is an open-source astronomical image-fitting program specialized for galaxies but potentially useful for other sources, which is fast, flexible, and highly extensible. Its object-oriented design allows new types of image components (2D surface-brightness functions) to be easily written and added to the program. Image functions provided with Imfit include Sersic, exponential, and Gaussian galaxy decompositions along with Core-Sersic and broken-exponential profiles, elliptical rings, and three components that perform line-of-sight integration through 3D luminosity-density models of disks and rings seen at arbitrary inclinations.

Available minimization algorithms include Levenberg-Marquardt, Nelder-Mead simplex, and Differential Evolution, allowing trade-offs between speed and decreased sensitivity to local minima in the fit landscape. Minimization can be done using the standard chi^2 statistic (using either data or model values to estimate per-pixel Gaussian errors, or else user-supplied error images) or the Cash statistic; the latter is particularly appropriate for cases of Poisson data in the low-count regime.

The C++ source code for Imfit is available under the GNU Public License.

[ascl:2108.024]
iminuit: Jupyter-friendly Python interface for C++ MINUIT2

Dembinski, Hans; Ongmongkolkul, Piti; Deil, Christoph; Menéndez Hurtado, David; Schreiner, Henry; Feickert, Matthew; Burr, Chris; Rost, Fabian; Pearce, Alex; Geiger, Lukas; Wiedemann, Bernhard M.; Gorelli, Marco; Zapata, Omar

iminuit is a Jupyter-friendly Python interface for the Minuit2 C++ library maintained by CERN's ROOT team. It can be used as a general robust function minimization method, but is most commonly used for likelihood fits of models to data, and to get model parameter error estimates from likelihood profile analysis.

[ascl:1804.014]
IMNN: Information Maximizing Neural Networks

This software trains artificial neural networks to find non-linear functionals of data that maximize Fisher information: information maximizing neural networks (IMNNs). As compressing large data sets vastly simplifies both frequentist and Bayesian inference, important information may be inadvertently missed. Likelihood-free inference based on automatically derived IMNN summaries produces summaries that are good approximations to sufficient statistics. IMNNs are robustly capable of automatically finding optimal, non-linear summaries of the data even in cases where linear compression fails: inferring the variance of Gaussian signal in the presence of noise, inferring cosmological parameters from mock simulations of the Lyman-α forest in quasar spectra, and inferring frequency-domain parameters from LISA-like detections of gravitational waveforms. In this final case, the IMNN summary outperforms linear data compression by avoiding the introduction of spurious likelihood maxima.

[ascl:1601.013]
ImpactModel: Black Hole Accretion Disk Impact Model

ImpactModel, written in Cython, computes the accretion disc impact spectrum at given frequencies and can compute other model quantities as a function of time.

[ascl:1808.004]
ImPlaneIA: Image Plane Approach to Interferometric Analysis

Aperture masking interferometric data analysis involves measuring phases and amplitudes of fringes formed by interference between holes in the pupil mask. These fringe observables can be measured by computing an analytic model of the point spread function and fitting the relevant set of spatial frequencies directly in the image plane, without recourse to numerical Fourier transforms. The ImPlaneIA pipeline converts aperture masking images to fringe observables by fitting fringes in the image plane, calibrates data from a target of interest with one or more point source calibrators, and contains some basic model-fitting routines. The pipeline can accept different mask geometries, instruments, and observing modes.

[ascl:2307.018]
IMRIpy: Intermediate Mass Ratio Inspirals simulator

IMRIpy simulates an Intermediate Mass Ratio Inspiral (IMRI) by gravitational wave emission with a Dark Matter(DM) halo or a (baryonic) Accretion Disk around the central Intermediate Mass Black Hole(IMBH). It can use different density profiles (such as DM spikes), and different interactions, such as dynamical friction with and without HaloFeedback models or accretion, to produce the simulation.

[ascl:2307.019]
IMRPhenomD: Phenomenological waveform model

The IMRPhenomD model generates gravitational wave signals for merging black hole binaries with non-precessing spins. The waveforms are produced in the frequency domain and include the inspiral, merger and ringdown parts for the dominant spherical harmonic mode of the signal. Part of LALSuite (ascl:2012.021) and also available as an independent code, IMRPhenomD is written in C and is calibrated against data from numerical relativity simulations. A re-implementation of IMRPhenomD in Python, PyIMRPhenomD (ascl:2307.023), is available.

[ascl:1010.046]
indexf: Line-strength Indices in Fully Calibrated FITS Spectra

This program measures line-strength indices in fully calibrated FITS spectra. By "fully calibrated" one should understand wavelength and relative flux-calibrated data. Note that the different types of line-strength indices that can be measured with indexf (see below) do not require absolute flux calibration. If even a relative flux-calibration is absent (or deficient), the derived indices should be transformed to an appropriate spectrophotometric system. The program can also compute index errors resulting from the propagation of random errors (e.g. photon statistics, read-out noise). This option is only available if the user provides the error spectrum as an additional input FITS file to indexf. The error spectrum must contain the unbiased standard deviation (and not the variance!) for each pixel of the data spectrum. In addition, indexf also estimates the effect of errors on radial velocity. For this purpose, the program performs Monte Carlo simulations by measuring each index using randomly drawn radial velocities (following a Gaussian distribution of a given standard deviation). If no error file is employed, the program can perform numerical simulations with synthetic error spectra, the latter generated from the original data spectra and assuming randomly generated S/N ratios.

[ascl:1806.005]
Indri: Pulsar population synthesis toolset

Indri models the population of single (not in binary or hierarchical systems) neutron stars. Given a starting distribution of parameters (birth place, velocity, magnetic field, and period), the code moves a set of stars through the time (by evolving spin period and magnetic field) and the space (by propagating through the Galactic potential). Upon completion of the evolution, a set of observables is computed (radio flux, position, dispersion measure) and compared with a radio survey such as the Parkes Multibeam Survey. The models' parameters are optimised by using the Markov Chain Monte Carlo technique.

[ascl:1210.023]
inf_solv: Kerr inflow solver

The efficiency of thin disk accretion onto black holes depends on the inner boundary condition, specifically the torque applied to the disk at the last stable orbit. This is usually assumed to vanish. This code estimates the torque on a magnetized disk using a steady magnetohydrodynamic inflow model originally developed by Takahashi et al. The efficiency e can depart significantly from the classical thin disk value. In some cases e > 1, i.e., energy is extracted from the black hole.

[ascl:1007.002]
INFALL: A code for calculating the mean initial and final density profiles around a virialized dark matter halo

Infall is a code for calculating the mean initial and final density profiles around a virialized dark matter halo. The initial profile is derived from the statistics of the initial Gaussian random field, accounting for the problem of peaks within peaks using the extended Press-Schechter model. Spherical collapse then yields the typical density and velocity profiles of the gas and dark matter that surrounds the final, virialized halo. In additional to the mean profile, ±1-σ profiles are calculated and can be used as an estimate of the scatter.

[ascl:2212.021]
Infinity: Calculate accretion disk radiation forces onto moving particles

Infinity sets an observer in a black hole - accretion disk system. The black hole can be either Schwarzschild (nonrotating) or Kerr (rotating) by choice of the user. This observer can be on the surface of the disk, in its exterior or its interior (if the disk is not opaque). Infinity then scans the entire sky around the observer and investigates whether photons emitted by the hot accretion disk material can reach them. After recording the incoming radiation, the program calculates the stress-energy tensor of the radiation. Afterwards, the program calculates the radiation flux and hence, the radiation force exerted on target particles of various velocity profiles.

[ascl:1201.017]
Inflation: Monte-Carlo Code for Slow-Roll Inflation

Inflation is a numerical code to generate power spectra and other observables through numerical solutions to flow equations. The code generates tensor and scalar power spectra as a function of wavenumber and various other parameters at specific wavenumbers of interest (such as for CMB, scalar perturbations at smaller scales, gravitational wave detection at direct detection frequencies). The output can be easily ported to publicly available Markov Chain codes to constrain cosmological parameters with data.

[ascl:1711.002]
inhomog: Biscale kinematical backreaction analytical evolution

The inhomog library provides Raychaudhuri integration of cosmological domain-wise average scale factor evolution using an analytical formula for kinematical backreaction Q_D evolution. The inhomog main program illustrates biscale examples. The library routine lib/Omega_D_precalc.c is callable by RAMSES (ascl:1011.007) using the RAMSES extension ramses-scalav.

[ascl:1801.005]
InitialConditions: Initial series solutions for perturbations in our Universe

InitialConditions finds the initial series solutions for perturbations in our Universe. This includes all scalar (1 adiabatic, 4 isocurvature and 2 magnetic modes), vector (1 vorticity mode, 1 magnetic mode), and tensor (1 gravitational wave mode and 1 magnetic mode) perturbations including terms up to second order in the neutrino mass. It can handle the standard species (cdm, baryons, photons), and two neutrino mass eigenstates (1 light, 1 heavy).

[ascl:2202.025]
INSANE: INflationary potential Simulator and ANalysis Engine

INSANE (INflationary potential Simulator and ANalysis Engine) takes either a numeric inflationary potential or a symbolic one, calculates the background evolution and then, using the Mukhanov-Sasaki equations, calculates the primordial power spectrum it yields. The package can analyze the results to extract the spectral index n_s, the index running alpha, the running of running and possibly higher moments. The package contains two main modules: BackgroundSolver solves the background equations, and the MsSolver module solves and analyses the MS equations.

[submitted]
INSPECTA: INtegrated SDHDF Processing Engine in C for Telescope data Analysis

INSPECTA (formerly sdhdfProc) is a software package to read, manipulate and process radio astronomy data in Spectral-Domain Hierarchical Data Format (SDHDF). It is available as part of the 'sdhdf_tools' repository.

[ascl:1907.027]
intensitypower: Spectrum multipoles modeler

intensitypower measures and models the auto- and cross-power spectrum multipoles of galaxy catalogs and radio intensity maps presented in spherical coordinates. It can also convert the multipoles to power spectrum wedges P(k,mu) and 2D power spectra P(k_perp,k_par). The code assumes the galaxy catalog is a set of discrete points and the radio intensity map is a pixelized continuous field which includes angular pixelization using healpix, binning in redshift channels, smoothing by a Gaussian telescope beam, and the addition of a Gaussian noise in each cell. The galaxy catalog and radio intensity map are transferred onto an FFT grid, and power spectrum multipoles are measured including curved-sky effects. Both maps include redshift-space distortions.

[ascl:2112.005]
Interferopy: Analyzing datacubes from radio-to-submm observations

Interferopy analyzes datacubes from radio-to-submm observations. It provides a homogenous interface to common tasks, making it easy to go from reduced datacubes to essential measurements and publication-quality plots. Its core functionalities are widely applicable and have been successfully tested on (but are not limited to) ALMA, NOEMA, VLA and JCMT data.

[ascl:1101.004]
InterpMC: Caching and Interpolated Likelihoods -- Accelerating Cosmological Monte Carlo Markov Chains

We describe a novel approach to accelerating Monte Carlo Markov Chains. Our focus is cosmological parameter estimation, but the algorithm is applicable to any problem for which the likelihood surface is a smooth function of the free parameters and computationally expensive to evaluate. We generate a high-order interpolating polynomial for the log-likelihood using the first points gathered by the Markov chains as a training set. This polynomial then accurately computes the majority of the likelihoods needed in the latter parts of the chains. We implement a simple version of this algorithm as a patch (InterpMC) to CosmoMC and show that it accelerates parameter estimatation by a factor of between two and four for well-converged chains. The current code is primarily intended as a "proof of concept", and we argue that there is considerable room for further performance gains. Unlike other approaches to accelerating parameter fits, we make no use of precomputed training sets or special choices of variables, and InterpMC is almost entirely transparent to the user.

[ascl:1403.010]
Inverse Beta: Inverse cumulative density function (CDF) of a Beta distribution

The Beta Inverse code solves the inverse cumulative density function (CDF) of a Beta distribution, allowing one to sample from the Beta prior directly. The Beta distribution is well suited as a prior for the distribution of the orbital eccentricities of extrasolar planets; imposing a Beta prior on orbital eccentricity is valuable for any type of observation of an exoplanet where eccentricity can affect the model parameters (e.g. transits, radial velocities, microlensing, direct imaging). The Beta prior is an excellent description of the current, empirically determined distribution of orbital eccentricities and thus employing it naturally incorporates an observer’s prior experience of what types of orbits are probable or improbable. The default parameters in the code are currently set to the Beta distribution which best describes the entire population of exoplanets with well-constrained orbits.

[ascl:1612.013]
InversionKit: Linear inversions from frequency data

InversionKit is an interactive Java program that performs rotational and structural linear inversions from frequency data.

[ascl:1303.022]
ionFR: Ionospheric Faraday rotation

Sotomayor-Beltran, C.; Sobey, C.; Hessels, J. W. T.; de Bruyn, G.; Noutsos, A.; Alexov, A.; Anderson, J.; Asgekar, A.; Avruch, I. M.; Beck, R.; Bell, M. E.; Bell, M. R.; Bentum, M. J.; Bernardi, G.; Best, P.; Birzan, L.; Bonafede, A.; Breitling, F.; Broderick, J.; Brouw, W. N.; Brueggen, M.; Ciardi, B.; de Gasperin, F.; Dettmar, R.-J.; van Duin, A.; Duscha, S.; Eisloeffel, J.; Falcke, H.; Fallows, R. A.; Fender, R.; Ferrari, C.; Frieswijk, W.; Garrett, M. A.; Griessmeier, J.; Grit, T.; Gunst, A. W.; Hassall, T. E.; Heald, G.; Hoeft, M.; Horneffer, A.; Iacobelli, M.; Juette, E.; Karastergiou, A.; Keane, E.; Kohler, J.; Kramer, M.; Kondratiev, V. I.; Koopmans, L. V. E.; Kuniyoshi, M.; Kuper, G.; van Leeuwen, J.; Maat, P.; Macario, G.; Markoff, S.; McKean, J. P.; Mulcahy, D. D.; Munk, H.; Orru, E.; Paas, H.; Pandey-Pommier, M.; Pilia, M.; Pizzo, R.; Polatidis, A. G.; Reich, W.; Roettgering, H.; Serylak, M.; Sluman, J.; Stappers, B. W.; Tagger, M.; Tang, Y.; Tasse, C.; ter Veen, S.; Vermeulen, R.; van Weeren, R. J.; Wijers, R. A. M. J.; Wijnholds, S. J.; Wise, M. W.; Wucknitz, O.; Yatawatta, S.; Zarka, P.

ionFR calculates the amount of ionospheric Faraday rotation for a specific epoch, geographic location, and line-of-sight. The code uses a number of publicly available, GPS-derived total electron content maps and the most recent release of the International Geomagnetic Reference Field. ionFR can be used for the calibration of radio polarimetric observations; its accuracy had been demonstrated using LOFAR pulsar observations.

[ascl:1804.002]
ipole: Semianalytic scheme for relativistic polarized radiative transport

ipole is a ray-tracing code for covariant, polarized radiative transport particularly useful for modeling Event Horizon Telescope sources, though may also be used for other relativistic transport problems. The code extends the ibothros scheme for covariant, unpolarized transport using two representations of the polarized radiation field: in the coordinate frame, it parallel transports the coherency tensor, and in the frame of the plasma, it evolves the Stokes parameters under emission, absorption, and Faraday conversion. The transport step is as spacetime- and coordinate- independent as possible; the emission, absorption, and Faraday conversion step is implemented using an analytic solution to the polarized transport equation with constant coefficients. As a result, ipole is stable, efficient, and produces a physically reasonable solution even for a step with high optical depth and Faraday depth.

[ascl:2310.009]
IQRM-APOLLO: Clean narrow-band RFI using Inter-Quartile Range Mitigation (IQRM) algorithm

IQRM-APOLLO cleans narrow-band radio frequency interference (RFI) using the Inter-Quartile Range Mitigation (IQRM) algorithm. By masking this interference, the code reduces the number of false positive pulsar candidates and increases sensitivity for pulsar detection. The IQRM algorithm is an outlier detection algorithm that is both non-parametric and robust to the presences of trends in time series data. Using short-duration data blocks, IQRM-APOLLO computes a spectral statistic that correlates with the presence of RFI, removing high outliers from the input signal.

[ascl:2311.008]
IQRM: IQRM interference flagging algorithm for radio pulsar and transient searches

IQRM implements the Inter-Quartile Range Mitigation (IQRM) interference flagging algorithm for radio pulsar and transient searches. This module provides only the algorithm that infers a channel mask from some spectral statistic that measures the level of RFI contamination in a time-frequency data block. It should be useful as a reference implementation to developers who wish to integrate IQRM into an existing pipeline or search code.

[ascl:1512.001]
IRACpm: Distortion correction for IRAC astrometric data

The IRACpm R package applies a 7-8 order distortion correction to IRAC astrometric data from the Spitzer Space Telescope and includes a function for measuring apparent proper motions between different Epochs. These corrections are applicable only to positions measured by APEX; cryogenic images benefit from a correction for varying intra-pixel sensitivity prior to the application of the distortion.

[ascl:1209.013]
IRACproc: IRAC Post-BCD Processing

IRACproc is a software suite that facilitates the co-addition of dithered or mapped Spitzer/IRAC data to make them ready for further analysis with application to a wide variety of IRAC observing programs. The software runs within PDL, a numeric extension for Perl available from pdl.perl.org, and as stand alone perl scripts. In acting as a wrapper for the Spitzer Science Center's MOPEX software, IRACproc improves the rejection of cosmic rays and other transients in the co-added data. In addition, IRACproc performs (optional) Point Spread Function (PSF) fitting, subtraction, and masking of saturated stars.

[ascl:9911.002]
IRAF: Image Reduction and Analysis Facility

IRAF includes a broad selection of programs for general image processing and graphics, plus a large number of programs for the reduction and analysis of optical and IR astronomy data. Other external or layered packages are available for applications such as data acquisition or handling data from other observatories and wavelength regimes such as the Hubble Space Telescope (optical), EUVE (extreme ultra-violet), or ROSAT and AXAF (X-ray). These external packages are distributed separately from the main IRAF distribution but can be easily installed. The IRAF system also includes a complete programming environment for scientific applications, which includes a programmable Command Language scripting facility, the IMFORT Fortran/C programming interface, and the full SPP/VOS programming environment in which the portable IRAF system and all applications are written.

[ascl:2106.040]
IRAGNSEP: Spectral energy distribution fitting code

iragnsep performs IR SED fits separated into AGN and galaxy contributions, and measures host galaxy properties free of AGN contamination. The advantage of iragnsep is that, in addition to fitting observed broadband photometric fluxes, it also incorporates IR spectra in the fits which, if available, improves the robustness of the galaxy-AGN separation. For the galaxy component, iragnsep uses a library of galaxy templates. In terms of the AGN contribution, if the input dataset is a mixture of spectral and photometric data, iragnsep uses a combination of power-laws for the AGN continuum, and some broad features for the silicate emission. If instead the dataset contains photometric data alone, the AGN contribution is accounted for by using a library of AGN templates. The advanced fitting techniques used by iragnsep combined with the powerful model comparison tests allows iragnsep to provide a statistically robust interpretation of IR SEDs in terms of AGN-galaxy contributions, even when the AGN contribution is highly diluted by the host galaxy emission.

[ascl:1406.014]
IRAS90: IRAS Data Processing

Berry, David S.; Parsons, Diana C.; Gong, Wei; Currie, Malcolm J.; Warren-Smith, Rodney F.; Morris, Huw

IRAS90 is a suite of programs for processing IRAS data. It takes advantage of Starlink's (ascl:1110.012) ADAM environment, which provides multi-platform availability of both data and the programs to process it, and the user friendly interface of the parameter entry system. The suite can determine positions in astrometric coordinates, draw grids, and offers other functions for standard astronomical measurement and standard projections.

[ascl:1406.015]
IRCAMDR: IRCAM3 Data Reduction Software

Aspin, Colin; McCaughrean, Mark; Bridger, Alan B.; Baines, Dave; Beard, Steven; Chan, S.; Giddings, Jack; Hartley, K. F.; Horsfield, A.P.; Kelly, B. D.; Emerson, J. P.; Currie, Malcolm J.; Economou, Frossie

The UKIRT IRCAM3 data reduction and analysis software package, IRCAMDR (formerly ircam_clred) analyzes and displays any 2D data image stored in the standard Starlink (ascl:1110.012) NDF data format. It reduces and analyzes IRCAM1/2 data images of 62x58 pixels and IRCAM3 images of 256x256 size. Most of the applications will work on NDF images of any physical (pixel) dimensions, for example, 1024x1024 CCD images can be processed.

[ascl:2004.015]
IRDAP: SPHERE-IRDIS polarimetric data reduction pipeline

van Holstein, R. G.; Girard, J. H.; de Boer, J.; Snik, F.; Milli, J.; Stam, D. M.; Ginski, C.; Mouillet, D.; Wahhaj, Z.; Schmid, H. M.; Keller, C. U.; Langlois, M.; Dohlen, K.; Vigan, A.; Pohl, A.; Carbillet, M.; Fantinel, D.; Maurel, D.; Origné, A.; Petit, C. Ramos, J.; Rigal, F.; Sevin, A.; Boccaletti, A.; Le Coroller, H.; Dominik, C.; Henning, T.; Lagadec, E.; Ménard, F.; Turatto, M.; Udry, S.; Chauvin, G.; Feldt, M.; Beuzit, J. -L.

IRDAP (IRDIS Data reduction for Accurate Polarimetry) accurately reduces SPHERE-IRDIS polarimetric data. It is a highly-automated end-to-end pipeline; its core feature is model-based correction of the instrumental polarization effects. IRDAP handles data taken both in field- and pupil-tracking mode and using the broadband filters Y, J, H and Ks. Data taken with the narrowband filters can be reduced as well, although with a somewhat worse accuracy. For pupil-tracking observations IRDAP can additionally apply angular differential imaging.

[ascl:1109.017]
IRDR: InfraRed Data Reduction

We describe the InfraRed Data Reduction (IRDR) software package, a small ANSI C library of fast image processing routines for automated pipeline reduction of infrared (dithered) observations. We developed the software to satisfy certain design requirements not met in existing packages (e.g., full weight map handling) and to optimize the software for large data sets (non-interactive tasks that are CPU and disk efficient). The software includes stand-alone C programs for tasks such as running sky frame subtraction with object masking, image registration and coaddition with weight maps, dither offset measurement using cross-correlation, and object mask dilation. Although we currently use the software to process data taken with CIRSI (a near-IR mosaic imager), the software is modular and concise and should be easy to adapt/reuse for other work.

[ascl:1205.007]
Iris: The VAO SED Application

Iris is a downloadable Graphical User Interface (GUI) application which allows the astronomer to build and analyze wide-band Spectral Energy Distributions (SEDs). The components of Iris have been contributed by members of the VAO. Specview, contributed by STScI, provides a GUI for reading, editing, and displaying SEDs, as well as defining models and parameter values. Sherpa, contributed by the Chandra project at SAO, provides a library of models, fit statistics, and optimization methods; the underlying I/O library, SEDLib, is a VAO product written by SAO to current IVOA (International Virtual Observatory Alliance) data model standards. NED is a service provided by IPAC for easy location of data for a given extragalactic source, including SEDs. SedImporter converts non-standard SED data files into a format supported by Iris.

[ascl:1602.016]
IRSFRINGE: Interactive tool for fringe removal from Spitzer IRS spectra

IRSFRINGE is an IDL-based GUI package that allows observers to interactively remove fringes from IRS spectra. Fringes that originate from the detector subtrates are observed in the IRS Short-High (SH) and Long-High (LH) modules. In the Long-Low (LL) module, another fringe component is seen as a result of the pre-launch change in one of the LL filters. The fringes in the Short-Low (SL) module are not spectrally resolved. the fringes are already largely removed in the pipeline processing when the flat field is applied. However, this correction is not perfect and remaining fringes can be removed with IRSFRINGE from data in each module. IRSFRINGE is available as a stand-alone package and is also part of the Spectroscopic Modeling, Analysis and Reduction Tool (SMART, ascl:1210.021).

[ascl:1303.029]
iSAP: Interactive Sparse Astronomical Data Analysis Packages

iSAP consists of three programs, written in IDL, which together are useful for spherical data analysis. MR/S (MultiResolution on the Sphere) contains routines for wavelet, ridgelet and curvelet transform on the sphere, and applications such denoising on the sphere using wavelets and/or curvelets, Gaussianity tests and Independent Component Analysis on the Sphere. MR/S has been designed for the PLANCK project, but can be used for many other applications. SparsePol (Polarized Spherical Wavelets and Curvelets) has routines for polarized wavelet, polarized ridgelet and polarized curvelet transform on the sphere, and applications such denoising on the sphere using wavelets and/or curvelets, Gaussianity tests and blind source separation on the Sphere. SparsePol has been designed for the PLANCK project. MS-VSTS (Multi-Scale Variance Stabilizing Transform on the Sphere), designed initially for the FERMI project, is useful for spherical mono-channel and multi-channel data analysis when the data are contaminated by a Poisson noise. It contains routines for wavelet/curvelet denoising, wavelet deconvolution, multichannel wavelet denoising and deconvolution.

[ascl:1403.009]
ISAP: ISO Spectral Analysis Package

Ali, Babar; Bauer, Otto; Brauher, Jim; Buckley, Mark; Harwood, Andrew; Hur, Min; Khan, Iffat; Li, Jing; Lord, Steve; Lutz, Dieter; Mazzarella, Joe; Molinari, Sergio; Morris, Pat; Narron, Bob; Seidenschwang, Karla; Sidher, Sunil; Sturm, Eckhard; Swinyard, Bruce; Unger, Sarah; Verstraete, Laurent; Vivares, Florence; Wieprecht, Ecki

ISAP, written in IDL, simplifies the process of visualizing, subsetting, shifting, rebinning, masking, combining scans with weighted means or medians, filtering, and smoothing Auto Analysis Results (AARs) from post-pipeline processing of the Infrared Space Observatory's (ISO) Short Wavelength Spectrometer (SWS) and Long Wavelength Spectrometer (LWS) data. It can also be applied to PHOT-S and CAM-CVF data, and data from practically any spectrometer. The result of a typical ISAP session is expected to be a "simple spectrum" (single-valued spectrum which may be resampled to a uniform wavelength separation if desired) that can be further analyzed and measured either with other ISAP functions, native IDL functions, or exported to other analysis package (*e.g.*, IRAF (ascl:9911.002), MIDAS (ascl:1302.017) if desired. ISAP provides many tools for further analysis, line-fitting, and continuum measurements, such as routines for unit conversions, conversions from wavelength space to frequency space, line and continuum fitting, flux measurement, synthetic photometry and models such as a zodiacal light model to predict and subtract the dominant foreground at some wavelengths.

[ascl:1809.010]
Isca: Idealized global circulation modeling

Vallis, Geoffrey K.; Colyer, Greg; Geen, Ruth; Gerber, Edwin; Jucker, Martin; Maher, Penelope; Paterson, Alexander; Pietschnig, Marianne; Penn, James; Thomson, Stephen I.

Isca provides a framework for the idealized modeling of the global circulation of planetary atmospheres at varying levels of complexity and realism. Though Isca is an outgrowth of models designed for Earth's atmosphere, it may readily be extended into other planetary regimes. Various forcing and radiation options are available. At the simple end of the spectrum a Held-Suarez case is available. An idealized grey radiation scheme, a grey scheme with moisture feedback, a two-band scheme and a multi-band scheme are also available, all with simple moist effects and astronomically-based solar forcing. At the complex end of the spectrum the framework provides a direct connection to comprehensive atmospheric general circulation models.

[ascl:1708.029]
iSEDfit: Bayesian spectral energy distribution modeling of galaxies

iSEDfit uses Bayesian inference to extract the physical properties of galaxies from their observed broadband photometric spectral energy distribution (SED). In its default mode, the inputs to iSEDfit are the measured photometry (fluxes and corresponding inverse variances) and a measurement of the galaxy redshift. Alternatively, iSEDfit can be used to estimate photometric redshifts from the input photometry alone.

After the priors have been specified, iSEDfit calculates the marginalized posterior probability distributions for the physical parameters of interest, including the stellar mass, star-formation rate, dust content, star formation history, and stellar metallicity. iSEDfit also optionally computes K-corrections and produces multiple "quality assurance" (QA) plots at each stage of the modeling procedure to aid in the interpretation of the prior parameter choices and subsequent fitting results. The software is distributed as part of the impro IDL suite.

[ascl:9909.003]
ISIS: A method for optimal image subtraction

ISIS is a complete package to process CCD images using the image Optimal subtraction method (Alard & Lupton 1998, Alard 1999). The ISIS package can find the best kernel solution even in case of kernel variations as a function of position in the image. The relevant computing time is minimal in this case and is only slightly different from finding constant kernel solutions. ISIS includes as well a number of facilities to compute the light curves of variables objects from the subtracted images. The basic routines required to build the reference frame and make the image registration are also provided in the package.

[ascl:1302.002]
ISIS: Interactive Spectral Interpretation System for High Resolution X-Ray Spectroscopy

ISIS, the Interactive Spectral Interpretation System, is designed to facilitate the interpretation and analysis of high resolution X-ray spectra. It is being developed as a programmable, interactive tool for studying the physics of X-ray spectrum formation, supporting measurement and identification of spectral features, and interaction with a database of atomic structure parameters and plasma emission models.

[ascl:1601.021]
ISO: Isochrone construction

ISO transforms MESA history files into a uniform basis for interpolation and then constructs new stellar evolution tracks and isochrones from that basis. It is written in Fortran and requires MESA (ascl:1010.083), primarily for interpolation. Though designed to ingest MESA star history files, tracks from other stellar evolution codes can be incorporated by loading the tracks into the data structures used in the codes.

[ascl:1503.010]
isochrones: Stellar model grid package

Isochrones, written in Python, simplifies common tasks often done with stellar model grids, such as simulating synthetic stellar populations, plotting evolution tracks or isochrones, or estimating the physical properties of a star given photometric and/or spectroscopic observations.

[ascl:1409.006]
iSpec: Stellar atmospheric parameters and chemical abundances

iSpec is an integrated software framework written in Python for the treatment and analysis of stellar spectra and abundances. Spectra treatment functions include cosmic rays removal, continuum normalization, resolution degradation, and telluric lines identification. It can also perform radial velocity determination and correction and resampling. iSpec can also determine atmospheric parameters (i.e effective temperature, surface gravity, metallicity, micro/macroturbulence, rotation) and individual chemical abundances by using either the synthetic spectra fitting technique or equivalent widths method. The synthesis is performed with SPECTRUM (ascl:9910.002).

[ascl:2009.004]
ISPy3: Integrated-light Spectroscopy for Python3

The ISPy3 suite of Python routines models and analyzes integrated-light spectra of stars and stellar populations. The actual spectral modeling and related tasks such as setting up model atmospheres is done via external codes. Currently, the Kurucz codes (ATLAS/SYNTHE) and MARCS/TurboSpectrum are supported, though implementing other similar codes should be relatively straight forward.

[ascl:1010.047]
ISW and Weak Lensing Likelihood Code

ISW and Weak Lensing Likelihood code is the likelihood code that calculates the likelihood of Integrated Sachs Wolfe and Weak Lensing of Cosmic Microwave Background using the WMAP 3year CMB maps with mass tracers such as 2MASS (2-Micron All Sky Survey), SDSS LRG (Sloan Digital Sky Survey Luminous Red Galaxies), SDSS QSOs (Sloan Digital Sky Survey Quasars) and NVSS (NRAO VLA All Sky Survey) radio sources. The details of the analysis (*thus the likelihood code) can be understood by reading the papers ISW paper and Weak lensing paper. The code does brute force theoretical matter power spectrum and calculations with CAMB. See the paper for an introduction, descriptions, and typical results from some pre-WMAP data. The code is designed to be integrated into CosmoMC. For further information concerning the integration, see Code Modification for integration into COSMOMC.

[ascl:1307.012]
ITERA: IDL Tool for Emission-line Ratio Analysis

ITERA, the IDL Tool for Emission-line Ratio Analysis, is an IDL widget tool that allows you to plot ratios of any strong atomic and ionized emission lines as determined by standard photoionization and shock models. These "line ratio diagrams" can then be used to determine diagnostics for nebulae excitation mechanisms or nebulae parameters such as density, temperature, metallicity, etc. ITERA can also be used to determine line sensitivities to such parameters, compare observations with the models, or even estimate unobserved line fluxes.

[ascl:1406.016]
IUEDR: IUE Data Reduction package

IUEDR reduces IUE data. It addresses the problem of working from the IUE Guest Observer tape or disk file through to a calibrated spectrum that can be used in scientific analysis and is a complete system for IUE data reduction. IUEDR was distributed as part of the Starlink software collection (ascl:1110.012).

[ascl:1801.002]
iWander: Dynamics of interstellar wanderers

iWander assesses the origin of interstellar small bodies such as asteroids and comets. It includes a series of databases and tools that can be used in general for studying the dynamics of an interstellar vagabond object (small−body, interstellar spaceship and even stars).

[ascl:2210.020]
ixpeobssim: Imaging X-ray Polarimetry Explorer simulator and analyzer

Baldini, Luca; Bucciantini, Niccolò; Lalla, Niccolò Di; Ehlert, Steven; Manfreda, Alberto; Negro, Michela; Omodei, Nicola; Pesce-Rollins, Melissa; Sgrò, Carmelo; Silvestri, Stefano

The simulation and analysis framework ixpeobssim was specifically developed for the Imaging X-ray Polarimetry Explorer (IXPE). It produces realistic simulated observations, in the form of event lists in FITS format, that also contain a strict superset of the information included in the publicly released IXPE data products. The framework's core simulation capabilities are complemented by post-processing applications that support the spatial, spectral, and temporal models needed for analysis of typical polarized X-ray sources, allowing implementation of complex, polarization-aware analysis pipelines. Where applicable, the data formats are consistent with the common display and analysis tools used by the community, *e.g.*, the binned count spectra can be fed into XSPEC (ascl:9910.005), along with the corresponding response functions, for doing standard spectral analysis. All ixpeobssim simulation and analysis tools are fully configurable via the command line.

[ascl:2009.007]
J plots: Tool for characterizing 2D and 3D structures in the interstellar medium

J plots classifies and quantifies a pixelated structure, based on its principal moments of inertia, thus enabling automatic detection and objective comparisons of centrally concentrated structures (cores), elongated structures (filaments) and hollow circular structures (bubbles) from the main population of slightly irregular blobs that make up most astronomical images. Examples of how to analyze 2D or 3D datasets, enabling an unbiased analysis and comparison of simulated and observed structures are provided along with the Python code.

[ascl:2208.015]
J-comb: Combine high-resolution and low-resolution data

J-comb combines high-resolution data with large-scale missing information with low-resolution data containing the short spacing. Based on uvcombine (ascl:2208.014), it takes as input FITS files of low- and high-resolution images, the angular resolution of the input images, and the pixel size of the input images, and outputs a FITS file of the combined image.

[ascl:1209.002]
JAGS: Just Another Gibbs Sampler

JAGS analyzes Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation not wholly unlike BUGS. JAGS has three aims:

- to have a cross-platform engine for the BUGS language;
- to be extensible, allowing users to write their own functions, distributions and samplers; and
- to be a platform for experimentation with ideas in Bayesian modeling.

[ascl:1403.018]
JAM: Jeans Anisotropic MGE modeling method

The Jeans Anisotropic MGE (JAM) modeling method uses the Multi-Gaussian Expansion parameterization for the galaxy surface brightness. The code allows for orbital anisotropy (three-integrals distribution function) and also provides the full second moment tensor, including proper motions and radial velocities.

[ascl:1010.007]
JAVELIN: Just Another Vehicle for Estimating Lags In Nuclei

JAVELIN (formerly known as SPEAR) is an approach to reverberation mapping that computes the lags between the AGN continuum and emission line light curves and their statistical confidence limits. It uses a damped random walk model to describe the quasar continuum variability and the ansatz that emission line variability is a scaled, smoothed and displaced version of the continuum. While currently configured only to simultaneously fit light curve means, it includes a general linear parameters formalism to fit more complex trends or calibration offsets. The noise matrix can be modified to allow for correlated errors, and the correlation matrix can be modified to use a different stochastic process. The transfer function model is presently a tophat, but this can be altered by changing the line-continuum covariance matrices. It is also able to cope with some problems in traditional reverberation mapping, such as irregular sampling, correlated errors and seasonal gaps.

[ascl:2111.002]
JAX: Autograd and XLA

Bradbury, James; Frostig, Roy; Hawkins, Peter; Johnson, Matthew James; Leary, Chris; Maclaurin, Dougal; Necula, George; Paszke, Adam; VanderPlas, Jake; Wanderman-Milne, Skye; Zhang, Qiao

JAX brings Autograd and XLA together for high-performance machine learning research. It can automatically differentiate native Python and NumPy functions. The code can differentiate through loops, branches, recursion, and closures, and it can take derivatives of derivatives of derivatives. JAX supports reverse-mode differentiation (a.k.a. backpropagation) via grad as well as forward-mode differentiation, and the two can be composed arbitrarily to any order.

[ascl:2007.021]
JB2008: Empirical Thermospheric Density Model

JB2008 (Jacchia-Bowman 2008) is an empirical thermospheric density model developed as an improved revision to the Jacchia-Bowman 2006 model, based on Jacchia’s diffusion equations. Driving solar indices are computed from on-orbit sensor data, which are used for the solar irradiances in the extreme through far ultraviolet, including x-ray and Lyman-α wavelengths. Exospheric temperature equations are developed to represent the thermospheric EUV and FUV heating. Semiannual density equations based on multiple 81-day average solar indices are used to represent the variations in the semiannual density cycle that result from EUV heating, and geomagnetic storm effects are modeled using the Dst index as the driver of global density changes.

[ascl:1411.020]
JCMT COADD: UKT14 continuum and photometry data reduction

COADD was used to reduce photometry and continuum data from the UKT14 instrument on the James Clerk Maxwell Telescope in the 1990s. The software can co-add multiple observations and perform sigma clipping and Kolmogorov-Smirnov statistical analysis. Additional information on the software is available in the JCMT Spring 1993 newsletter (large PDF).

[ascl:1406.019]
JCMTDR: Applications for reducing JCMT continuum data in GSD format

JCMTDR reduces continuum on-the-fly mapping data obtained with UKT14 or the heterodyne instruments using the IFD on the James Clerk Maxwell Telescope. This program reduces archive data and heterodyne beam maps and was distributed as part of the Starlink software collection (ascl:1110.012).

[ascl:2307.001]
Jdaviz: JWST astronomical data analysis tools in the Jupyter platform

JDADF Developers; Averbukh, Jesse; Bradley, Larry; Buikhuizen, Mario; Busko, Ivo; Cherinka, Brian; Conroy, Kyle; Earl, Nicholas; Fox, Ori; Geda, Robel; Jones, Craig; Karatay, Hatice; Kotler, Jenn; Lim, Pey Lian; Morris, Brett; Nguyen, Duy; O'Steen, Richard; Ogaz, Sara; Ogle, Patrick; Otor, O. Justin; Pacifici, Camilla; Robitaille, Thomas; Shanahan, Clare; Tollerud, Erik; Volfman, Sabrina

Jdaviz provides data viewers and analysis plugins that can be flexibly combined as desired to create interactive applications. It offers Specviz (ascl:1902.011) for visualization and quick-look analysis of 1D astronomical spectra; Mosviz for visualization of astronomical spectra, including 1D and 2D spectra as well as contextual information, and Cubeviz for visualization of spectroscopic data cubes (such as those produced by JWST MIRI). Imviz, which provides visualization and quick-look analysis for 2D astronomical images, is also included. Jdaviz is designed with instrument modes from the James Webb Space Telescope (JWST) in mind, but the tool is flexible enough to read in data from many astronomical telescopes, and the documentation provides a complete table of all supported modes.

[ascl:2305.020]
JEDI: James's EVE Dimming Index

JEDI searches for and characterizes coronal dimming in light curves produced from the Solar Dynamics Observatory (SDO) Extreme Ultraviolet (EUV) Variability Experiment (EVE). The suite has a wrapper script that calls other functions, which can also be run independently assuming needed inputs from prior functions are provided. JEDI's functions fit light curves and return the best fit, compute precision for iron light curves, and find the biggest dimming depth and its time in a given light curve. JEDI also includes functions for finding the duration of the dimming, minimum, maximum, and mean slope of dimming of a light curve, and for identifying the biggest peak in two light curves, time shifting them so the peaks are concurrent, scaling them so the peaks are the same magnitude, and then subtracting them, among other useful functions.

[ascl:2304.006]
JET: JWST Exoplanet Targeting

JET (JWST Exoplanet Targeting) optimizes lists of exoplanet targets for atmospheric characterization by the James Webb Space Telescope (JWST). The software uses catalogs of planet detections, either simulated, or actual and categorizes targets by radius and equilibrium temperature; it also estimates planet masses and generates model spectra and simulated instrument spectra. JET then performs a statistical analysis to determine if the instrument spectra can confirm an atmospheric detection and finally ranks the targets within each category by observation time required for detection.

[ascl:1702.005]
JetCurry: Modeling 3D geometry of AGN jets from 2D images

Written in Python, JetCurry models the 3D geometry of jets from 2-D images. JetCurry requires NumPy and SciPy and incorporates emcee (ascl:1303.002) and AstroPy (ascl:1304.002), and optionally uses VPython. From a defined initial part of the jet that serves as a reference point, JetCurry finds the position of highest flux within a bin of data in the image matrix and fits along the *x* axis for the general location of the bends in the jet. A spline fitting is used to smooth out the resulted jet stream.

[ascl:1810.003]
JETGET: Hydrodynamic jet simulation visualization and analysis

JETGET accesses, visualizes, and analyses (magnetized-)fluid dynamics data stored in Hierarchical Data Format (HDF) and ASCII files. Although JETGET has been optimized to handle data output from jet simulations using the Zeus code (ascl:1306.014) from NCSA, it is also capable of analyzing other data output from simulations using other codes. JETGET can select variables from the data files, render both two- and three-dimensional graphics and analyze and plot important physical quantities. Graphics can be saved in encapsulated Postscript, JPEG, VRML, or saved into an MPEG for later visualization and/or presentations. The strength of JETGET in extracting the physics underlying such phenomena is demonstrated as well as its capabilities in visualizing the 3-dimensional features of the simulated magneto-hydrodynamic jets. The JETGET tool is written in Interactive Data Language (IDL) and uses a graphical user interface to manipulate the data. The tool was developed on a LINUX platform and can be run on any platform that supports IDL.

[ascl:2009.001]
JetSeT: Numerical modeling and SED fitting tool for relativistic jets

JetSeT reproduces radiative and accelerative processes acting in relativistic jets and fits the numerical models to observed data. This C/Python framework re-bins observed data, can define data sets, and binds to astropy tables and quantities. It can use Synchrotron Self-Compton (SSC), external Compton (EC) and EC against the CMB when defining complex numerical radiative scenarios. JetSeT can constrain the model in the pre-fitting stage based on accurate and already published phenomenological trends starting from parameters such as spectral indices, peak fluxes and frequencies, and spectral curvatures. The package fits multiwavelength SEDs using both frequentist approach and Bayesian MCMC sampling, and also provides self-consistent temporal evolution of the plasma under the effect of radiative and accelerative processes for both first order and second order (stochastic acceleration) processes.

[ascl:2404.022]
jetsimpy: Hydrodynamic model of gamma-ray burst jet and afterglow

jetsimpy creates hydrodynamic simulations of relativistic blastwaves with tabulated angular energy and Lorentz factor profiles and efficiently models Gamma-Ray Burst afterglows. It supports tabulated angular energy and tabulated angular Lorentz factor profiles. jetsimpy also supports ISM, wind, and mixed external density profile, including synthetic afterglow light curves, apparent superluminal motion, and sky map and Gaussian equivalent image sizes. Additionally, you can add your own emissivity model by defining a lambda function in a c++ source file, allowing the package to be used for more complicated models such as Synchrotron self-absorption.

[ascl:2112.027]
JexoSim 2.0: JWST Exoplanet Observation Simulator

JexoSim 2.0 (JWST Exoplanet Observation Simulator) simulates exoplanet transit observations using all four instruments of the James Webb Space Telescope, and is designed for the planning and validation of science cases for JWST. The code generates synthetic spectra that capture the full impact of complex noise sources and systematic trends, allowing for assessment of both accuracy and precision in the final spectrum. JexoSim does not contain all known systematics for the various instruments, but is a good starting point to investigate the effects of systematics, and has the framework to incorporate more systematics in the future.

[ascl:1308.016]
JHelioviewer: Visualization software for solar physics data

Mueller, Daniel; Dimitoglou, George; Caplins, Benjamin; Garcia Ortiz, Juan Pablo; Wamsler, Benjamin; Hughitt, Keith; Alexanderian, Alen; Ireland, Jack; Amadigwe, Desmond; Fleck, Bernhard

JHelioview is open source visualization software for solar physics data. The JHelioviewer client application enables users to browse petabyte-scale image archives; the JHelioviewer server integrates a JPIP server, metadata catalog, and an event server. JHelioview uses the JPEG 2000 image compression standard, which provides efficient access to petabyte-scale image archives; JHelioviewer also allows users to locate and manipulate specific data sets.

[ascl:1207.013]
JKTEBOP: Analyzing light curves of detached eclipsing binaries

The JKTEBOP code is used to fit a model to the light curves of detached eclipsing binary stars in order to derive the radii of the stars as well as various other quantities. It is very stable and includes extensive Monte Carlo or bootstrapping error analysis algorithms. It is also excellent for transiting extrasolar planetary systems. All input and output is done by text files; JKTEBOP is written in almost-standard FORTRAN 77 using first the g77 compiler and now the ifort compiler.

[ascl:1511.016]
JKTLD: Limb darkening coefficients

JKTLD outputs theoretically-calculated limb darkening (LD) strengths for equations (LD laws) which predict the amount of LD as a function of the part of the star being observed. The coefficients of these laws are obtained by bilinear interpolation (in effective temperature and surface gravity) in published tables of coefficients calculated from stellar model atmospheres by several researchers. Many observations of stars require the strength of limb darkening (LD) to be estimated, which can be done using theoretical models of stellar atmospheres; JKTLD can help in these circumstances.

[ascl:2006.013]
JoXSZ: Joint X-ray and SZ fitting for galaxy clusters in Python

JoXSZ jointly fits the thermodynamic profiles of galaxy clusters from both SZ and X-ray data using a Markov chain Monte Carlo fitting algorithm. It is an enhanced version of preprofit (ascl:1910.002), which fits only SZ data. JoXSZ parameterizes the pressure and electron density profile of a galaxy cluster with a given center and derives the temperature profile as the ratio of these quantities through the ideal gas law. The X-ray and SZ-based temperatures can be similar or different, which allows study of the cluster elongation along line of sight, gas clumping, or calibration uncertainties.

[submitted]
JPFITS (C# .Net FITS File Interaction)

FITS File interaction written in Visual Studio C# .Net.

JPFITS is not based upon any other implementation and is written from the ground-up, consistent with the FITS standard, designed to interact with FITS files as object-oriented structures.

JPFITS provides functionality to interact with FITS images and binary table extensions, as well as providing common mathematical methods for the manipulation of data, data reductions, profile fitting, photometry, etc.

JPFITS also implements object-oriented classes for Point Source Extraction, World Coordinate Solutions (WCS), WCS automated field solving, FITS Headers and Header Keys, etc.

The automatic world coordinate solver is based on the trigonometric algorithm as described here:

https://iopscience.iop.org/article/10.1088/1538-3873/ab7ee8

All function parameters, methods, properties, etc., are coded with XML descriptions which will function with Visual Studio. Other code editors may or may not read the XML files.

Everything which is reasonable to parallelize in order to benefit from the computation speed increase for multi-threaded systems has been done so. In all such cases function options are given in order to specify the use of parallelism or not. Generally, most image manipulation functions are highly amenable to parallelism. No parallelism is forced, i.e., any code which may execute parallelized is given a user option to do so or not.

[ascl:1908.017]
JPLephem: Jet Propulsion Lab ephemerides package

JPLephem loads and uses standard Jet Propulsion Laboratory (JPL) ephemerides for predicting the position and velocity of a planet or other Solar System body. It is one of the foundations of the Skyfield (ascl:1907.024) astronomy library for Python, and can also be used as a standalone package to generate raw vectors.

[ascl:1511.002]
JSPAM: Interacting galaxies modeller

JSPAM models galaxy collisions using a restricted n-body approach to speed up computation. Instead of using a softened point-mass potential, the software supports a modified version of the three component potential created by Hernquist (1994, ApJS 86, 389). Although spherically symmetric gravitationally potentials and a Gaussian model for the bulge are used to increase computational efficiency, the potential mimics that of a fully consistent n-body model of a galaxy. Dynamical friction has been implemented in the code to improve the accuracy of close approaches between galaxies. Simulations using this code using thousands of particles over the typical interaction times of a galaxy interaction take a few seconds on modern desktop workstations, making it ideal for rapidly prototyping the dynamics of colliding galaxies. Extensive testing of the code has shown that it produces nearly identical tidal features to those from hierarchical tree codes such as Gadget but using a fraction of the computational resources. This code was used in the Galaxy Zoo: Mergers project and is very well suited for automated fitting of galaxy mergers with automated pattern fitting approaches such as genetic algorithms. Java and Fortran versions of the code are available.

[ascl:1607.007]
JUDE: An Utraviolet Imaging Telescope pipeline

JUDE (Jayant's UVIT Data Explorer) converts the Level 1 data (FITS binary table) from the Ultraviolet Imaging Telescope (UVIT) on ASTROSAT into three output files: a photon event list as a function of frame number (FITS binary table); a FITS image file with two extensions; and a PNG file created from the FITS image file with an automated scaling.

[ascl:1812.016]
Juliet: Transiting and non-transiting exoplanetary systems modelling tool

Juliet essentially serves as a wrapper of other tools, including Batman (ascl:1510.002), George (ascl:1511.015), Dynesty (ascl:1809.013) and AstroPy (ascl:1304.002), to analyze and model transits, radial-velocities, or both from multiple instruments at the same time. Using nested sampling algorithms, it performs a thorough sampling of the parameter space and a model comparison via Bayesian evidences. Juliet also fits transiting and non-transiting multi-planetary systems, and Gaussian Processes (GPs) which might share hyperparameters between the photometry and radial-velocities simultaneously (e.g., stellar rotation periods).

[ascl:1109.024]
Jupiter: Multidimensional Astrophysical Hydrocode

Jupiter is a multidimensional astrophysical hydrocode. It is based on a Godunov method, and it is parallelized with MPI. The mesh geometry can either be cartesian, cylindrical or spherical. It allows mesh refinement and includes special features adapted to the description of planets embedded in disks and nearly steady states.

[ascl:1702.003]
juwvid: Julia code for time-frequency analysis

Juwvid performs time-frequency analysis. Written in Julia, it uses a modified version of the Wigner distribution, the pseudo Wigner distribution, and the short-time Fourier transform from MATLAB GPL programs, tftb-0.2. The modification includes the zero-padding FFT, the non-uniform FFT, the adaptive algorithm by Stankovic, Dakovic, Thayaparan 2013, the S-method, the L-Wigner distribution, and the polynomial Wigner-Ville distribution.

[ascl:1904.029]
JVarStar: Variable Star Analysis Library

JVarStar (Java Variable Star Analysis) performs pattern classification by analyzing variable star data. This all-in-one library package includes machine learning techniques, fundamental mathematical methods, and digital signal processing functions that can be externally referenced (i.e., from Python), or can be used for further Java development. This library has dependencies on several open source packages that, along with the developed functionality, provides a developer with an easily accessible library from which to construct stable variable star analysis and classification code.

[ascl:1504.017]
JWFront: Wavefronts and Light Cones for Kerr Spacetimes

JWFront visualizes wavefronts and light cones in general relativity. The interactive front-end allows users to enter the initial position values and choose the values for mass and angular momentum per unit mass. The wavefront animations are available in 2D and 3D; the light cones are visualized using the coordinate systems *(t, x, y)* or *(t, z, x)*. JWFront can be easily modified to simulate wavefronts and light cones for other spacetime by providing the Christoffel symbols in the program.

[ascl:2110.001]
JWSTSim: Geometric-Focused JWST Deep Field Image Simulation

JWST_Simulation generates a novel geometric-focused deep field simulation of the expected JWST future deep field image. Galaxies are represented by ellipses with randomly-generated positions and orientations. Three scripts are included: a deterministic simulation, an ensemble simulation, and a more-realistic monochrome image simulation. The following initial conditions can be perturbed in these codes: H0, Ωm, ΩΛ, the dark energy equation of state parameter, the number of unseen galaxies in the Hubble Ultra Deep Field Image (HUDF), the increase in effective radius due to the JWST’s higher sensitivity, the anisotropy of dark energy, and the maximum redshift reached by the JWST. Galaxy number densities are estimated using integration over comoving volume with an integration constant calibrated with the Hubble Ultra Deep Field. A galaxy coverage percentage is calculated for each image to determine the percentage of the background occupied by galaxies.

[ascl:1507.013]
K-Inpainting: Inpainting for Kepler

Inpainting is a technique for dealing with gaps in time series data, as frequently occurs in asteroseismology data, that may generate spurious peaks in the power spectrum, thus limiting the analysis of the data. The inpainting method, based on a sparsity prior, judiciously fills in gaps in the data, preserving the asteroseismic signal as far as possible. This method can be applied both on ground and space-based data. The inpainting technique improves the oscillation modes detection and estimation, the impact of the observational window function is reduced, and the interpretation of the power spectrum is simplified. K-Inpainting can be used to study very long time series of many stars because its computation is very fast.

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