Results 1101-1150 of 2164 (2122 ASCL, 42 submitted)

[ascl:1505.019]
TFIT: Mixed-resolution data set photometry package

Laidler, Victoria G.; Papovich, Casey; Grogin, Norman A.; Idzi, Rafal; Dickinson, Mark; Ferguson, Henry C.; Hilbert, Bryan; Clubb, Kelsey; Ravindranath, Swara

TFIT measures galaxy photometry using prior knowledge of sources in a deep, high‐resolution image (HRI) to improve photometric measurements of objects in a corresponding low‐resolution image (LRI) of the same field, usually at a different wavelength. For background‐limited data, this technique produces optimally weighted photometry that maximizes signal‐to‐noise ratio (S/N). For objects not significantly detected in the low‐resolution image, it provides useful and quantitative information for setting upper limits.

This code is no longer updated and has been superseded by T-PHOT (ascl:1609.001).

[ascl:1505.018]
POKER: P Of K EstimatoR

POKER (P Of K EstimatoR) estimates the angular power spectrum of a 2D map or the cross-power spectrum of two 2D maps in the flat sky limit approximation in a realistic data context: steep power spectrum, non periodic boundary conditions, arbitrary pixel resolution, non trivial masks and observation patch geometry.

[ascl:1505.017]
HALOGEN: Approximate synthetic halo catalog generator

HALOGEN generates approximate synthetic halo catalogs. Written in C, it decomposes the problem of generating cosmological tracer distributions (eg. halos) into four steps: generating an approximate density field, generating the required number of tracers from a CDF over mass, placing the tracers on field particles according to a bias scheme dependent on local density, and assigning velocities to the tracers based on velocities of local particles. It also implements a default set of four models for these steps. HALOGEN uses 2LPTic (ascl:1201.005) and CUTE (ascl:1505.016); the software is flexible and can be adapted to varying cosmologies and simulation specifications.

[ascl:1505.016]
CUTE: Correlation Utilities and Two-point Estimation

CUTE (Correlation Utilities and Two-point Estimation) extracts any two-point statistic from enormous datasets with hundreds of millions of objects, such as large galaxy surveys. The computational time grows with the square of the number of objects to be correlated; technology provides multiple means to massively parallelize this problem and CUTE is specifically designed for these kind of calculations. Two implementations are provided: one for execution on shared-memory machines using OpenMP and one that runs on graphical processing units (GPUs) using CUDA.

[ascl:1505.015]
2dfdr: Data reduction software

2dfdr is an automatic data reduction pipeline dedicated to reducing multi-fibre spectroscopy data, with current implementations for AAOmega (fed by the 2dF, KOALA-IFU, SAMI Multi-IFU or older SPIRAL front-ends), HERMES, 2dF (spectrograph), 6dF, and FMOS. A graphical user interface is provided to control data reduction and allow inspection of the reduced spectra.

[ascl:1505.014]
FCLC: Featureless Classification of Light Curves

FCLC (Featureless Classification of Light Curves) software describes the static behavior of a light curve in a probabilistic way. Individual data points are converted to densities and consequently probability density are compared instead of features. This gives rise to an independent classification which can corroborate the usefulness of the selected features.

[ascl:1505.013]
cosmoabc: Likelihood-free inference for cosmology

Ishida, Emille E. O.; Vitenti, Sandro D. P.; Penna-Lima, Mariana; Trindade, Arlindo M.; Cisewski, Jessi; de Souza, Rafael M.; Cameron, Ewan; Busti, Vinicius C.

Approximate Bayesian Computation (ABC) enables parameter inference for complex physical systems in cases where the true likelihood function is unknown, unavailable, or computationally too expensive. It relies on the forward simulation of mock data and comparison between observed and synthetic catalogs. cosmoabc is a Python Approximate Bayesian Computation (ABC) sampler featuring a Population Monte Carlo variation of the original ABC algorithm, which uses an adaptive importance sampling scheme. The code can be coupled to an external simulator to allow incorporation of arbitrary distance and prior functions. When coupled with the numcosmo library, it has been used to estimate posterior probability distributions over cosmological parameters based on measurements of galaxy clusters number counts without computing the likelihood function.

[ascl:1505.012]
LSSGALPY: Visualization of the large-scale environment around galaxies on the 3D space

LSSGALPY provides visualization tools to compare the 3D positions of a sample (or samples) of isolated systems with respect to the locations of the large-scale structures galaxies in their local and/or large scale environments. The interactive tools use different projections in the 3D space (right ascension, declination, and redshift) to study the relation of the galaxies with the LSS. The tools permit visualization of the locations of the galaxies for different values of redshifts and redshift ranges; the relationship of isolated galaxies, isolated pairs, and isolated triplets to the galaxies in the LSS can be visualized for different values of the declinations and declination ranges.

[ascl:1505.011]
missForest: Nonparametric missing value imputation using random forest

missForest imputes missing values particularly in the case of mixed-type data. It uses a random forest trained on the observed values of a data matrix to predict the missing values. It can be used to impute continuous and/or categorical data including complex interactions and non-linear relations. It yields an out-of-bag (OOB) imputation error estimate without the need of a test set or elaborate cross-validation and can be run in parallel to save computation time. missForest has been used to, among other things, impute variable star colors in an All-Sky Automated Survey (ASAS) dataset of variable stars with no NOMAD match.

[ascl:1505.010]
COBS: COnstrained B-Splines

COBS (COnstrained B-Splines), written in R, creates constrained regression smoothing splines via linear programming and sparse matrices. The method has two important features: the number and location of knots for the spline fit are established using the likelihood-based Akaike Information Criterion (rather than a heuristic procedure); and fits can be made for quantiles (e.g. 25% and 75% as well as the usual 50%) in the response variable, which is valuable when the scatter is asymmetrical or non-Gaussian. This code is useful for, for example, estimating cluster ages when there is a wide spread in stellar ages at a chosen absorption, as a standard regression line does not give an effective measure of this relationship.

[ascl:1505.009]
StellaR: Stellar evolution tracks and isochrones tools

stellaR accesses and manipulates publicly available stellar evolutionary tracks and isochrones from the Pisa low-mass database. It retrieves and plots the required calculations from CDS, constructs by interpolation tracks or isochrones of compositions different to the ones available in the database, constructs isochrones for age not included in the database, and extracts relevant evolutionary points from tracks or isochrones.

[ascl:1505.008]
SCEPtER: Stellar CharactEristics Pisa Estimation gRid

SCEPtER (Stellar CharactEristics Pisa Estimation gRid) estimates the stellar mass and radius given a set of observable quantities; the results are obtained by adopting a maximum likelihood technique over a grid of pre-computed stellar models. The code is quite flexible since different observables can be used, depending on their availability, as well as different grids of models.

[ascl:1505.007]
Starfish: Robust spectroscopic inference tools

Starfish is a set of tools used for spectroscopic inference. It robustly determines stellar parameters using high resolution spectral models and uses Markov Chain Monte Carlo (MCMC) to explore the full posterior probability distribution of the stellar parameters. Additional potential applications include other types of spectra, such as unresolved stellar clusters or supernovae spectra.

[ascl:1505.006]
Athena3D: Flux-conservative Godunov-type algorithm for compressible magnetohydrodynamics

Written in FORTRAN, Athena3D, based on Athena (ascl:1010.014), is an implementation of a flux-conservative Godunov-type algorithm for compressible magnetohydrodynamics. Features of the Athena3D code include compressible hydrodynamics and ideal MHD in one, two or three spatial dimensions in Cartesian coordinates; adiabatic and isothermal equations of state; 1st, 2nd or 3rd order reconstruction using the characteristic variables; and numerical fluxes computed using the Roe scheme. In addition, it offers the ability to add source terms to the equations and is parallelized based on MPI.

[ascl:1505.005]
ARoME: Analytical Rossiter-McLaughlin Effects

The ARoMe (Analytical Rossiter-McLaughlin Effects) library generates analytical Rossiter-McLaughlin (RM) effects. It models the Doppler-shift of a star during a transit measured by the fit of a cross-correlation function by a Gaussian function, fit of an observed spectrum by a modeled one, and the weighted mean.

[ascl:1505.004]
KS Integration: Kelvin-Stokes integration

KS Intergration solves for mutual photometric effects produced by planets and spots allowing for analysis of planetary occultations of spots and spots regions. It proceeds by identifying integrable and non integrable arcs on the objects profiles and analytically calculates the solution exploiting the power of Kelvin-Stokes theorem. It provides the solution up to the second degree of the limb darkening law.

[ascl:1505.003]
caret: Classification and Regression Training

caret (Classification And REgression Training) provides functions for training and plotting classification and regression models. It contains tools for data splitting, pre-processing, feature selection, model tuning using resampling, and variable importance estimation, as well as other functionality.

[ascl:1505.002]
ASteCA: Automated Stellar Cluster Analysis

ASteCA (Automated Stellar Cluster Analysis), written in Python, fully automates standard tests applied on star clusters in order to determine their characteristics, including center, radius, and stars' membership probabilities. It also determines associated intrinsic/extrinsic parameters, including metallicity, age, reddening, distance, total mass, and binarity fraction, among others.

[ascl:1505.001]
CALCEPH: Planetary ephemeris files access code

CALCEPH accesses binary planetary ephemeris files, including INPOPxx, JPL DExxx ,and SPICE ephemeris files. It provides a C Application Programming Interface (API) and, optionally, a Fortran 77 or 2003 interface to be called by the application. Two groups of functions enable the access to the ephemeris files, single file access functions, provided to make transition easier from the JPL functions, such as PLEPH, to this library, and many ephemeris file at the same time. Although computers have different endianess (order in which integers are stored as bytes in computer memory), CALCEPH can handles the binary ephemeris files with any endianess by automatically swaps the bytes when it performs read operations on the ephemeris file.

[ascl:1504.021]
SOAP 2.0: Spot Oscillation And Planet 2.0

SOAP (Spot Oscillation And Planet) 2.0 simulates the effects of dark spots and bright plages on the surface of a rotating star, computing their expected radial velocity and photometric signatures. It includes the convective blueshift and its inhibition in active regions.

[ascl:1504.020]
BGLS: A Bayesian formalism for the generalised Lomb-Scargle periodogram

BGLS calculates the Bayesian Generalized Lomb-Scargle periodogram. It takes as input arrays with a time series, a dataset and errors on those data, and returns arrays with sampled periods and the periodogram values at those periods.

[ascl:1504.019]
LineProf: Line Profile Indicators

LineProf implements a series of line-profile analysis indicators and evaluates its correlation with RV data. It receives as input a list of Cross-Correlation Functions and an optional list of associated RV. It evaluates the line-profile according to the indicators and compares it with the computed RV if no associated RV is provided, or with the provided RV otherwise.

[ascl:1504.018]
D3PO: Denoising, Deconvolving, and Decomposing Photon Observations

D3PO (Denoising, Deconvolving, and Decomposing Photon Observations) addresses the inference problem of denoising, deconvolving, and decomposing photon observations. Its primary goal is the simultaneous but individual reconstruction of the diffuse and point-like photon flux given a single photon count image, where the fluxes are superimposed. A hierarchical Bayesian parameter model is used to discriminate between morphologically different signal components, yielding a diffuse and a point-like signal estimate for the photon flux components.

[ascl:1504.017]
JWFront: Wavefronts and Light Cones for Kerr Spacetimes

JWFront visualizes wavefronts and light cones in general relativity. The interactive front-end allows users to enter the initial position values and choose the values for mass and angular momentum per unit mass. The wavefront animations are available in 2D and 3D; the light cones are visualized using the coordinate systems *(t, x, y)* or *(t, z, x)*. JWFront can be easily modified to simulate wavefronts and light cones for other spacetime by providing the Christoffel symbols in the program.

[ascl:1504.016]
MRrelation: Posterior predictive mass distribution

MRrelation calculates the posterior predictive mass distribution for an individual planet. The probabilistic mass-radius relationship (M-R relation) is evaluated within a Bayesian framework, which both quantifies this intrinsic dispersion and the uncertainties on the M-R relation parameters.

[ascl:1504.015]
IGMtransmission: Transmission curve computation

IGMtransmission is a Java graphical user interface that implements Monte Carlo simulations to compute the corrections to colors of high-redshift galaxies due to intergalactic attenuation based on current models of the Intergalactic Medium. The effects of absorption due to neutral hydrogen are considered, with particular attention to the stochastic effects of Lyman Limit Systems. Attenuation curves are produced, as well as colors for a wide range of filter responses and model galaxy spectra. Photometric filters are included for the Hubble Space Telescope, the Keck telescope, the Mt. Palomar 200-inch, the SUBARU telescope and UKIRT; alternative filter response curves and spectra may be readily uploaded.

[ascl:1504.014]
abcpmc: Approximate Bayesian Computation for Population Monte-Carlo code

abcpmc is a Python Approximate Bayesian Computing (ABC) Population Monte Carlo (PMC) implementation based on Sequential Monte Carlo (SMC) with Particle Filtering techniques. It is extendable with k-nearest neighbour (KNN) or optimal local covariance matrix (OLCM) pertubation kernels and has built-in support for massively parallelized sampling on a cluster using MPI.

[ascl:1504.013]
kozai: Hierarchical triple systems evolution

The kozai Python package evolves hierarchical triple systems in the secular approximation. As its name implies, the kozai package is useful for studying Kozai-Lidov oscillations. The kozai package can represent and evolve hierarchical triples using either the Delaunay orbital elements or the angular momentum and eccentricity vectors. kozai contains functions to calculate the period of Kozai-Lidov oscillations and the maximum eccentricity reached; it also contains a module to study octupole order effects by averaging over individual Kozai-Lidov oscillations.

[ascl:1504.012]
DPI: Symplectic mapping for binary star systems for the Mercury software package

DPI is a FORTRAN77 library that supplies the symplectic mapping method for binary star systems for the Mercury N-Body software package (ascl:1201.008). The binary symplectic mapping is implemented as a hybrid symplectic method that allows close encounters and collisions between massive bodies and is therefore suitable for planetary accretion simulations.

[ascl:1504.011]
samiDB: A Prototype Data Archive for Big Science Exploration

samiDB is an archive, database, and query engine to serve the spectra, spectral hypercubes, and high-level science products that make up the SAMI Galaxy Survey. Based on the versatile Hierarchical Data Format (HDF5), samiDB does not depend on relational database structures and hence lightens the setup and maintenance load imposed on science teams by metadata tables. The code, written in Python, covers the ingestion, querying, and exporting of data as well as the automatic setup of an HTML schema browser. samiDB serves as a maintenance-light data archive for Big Science and can be adopted and adapted by science teams that lack the means to hire professional archivists to set up the data back end for their projects.

[ascl:1504.010]
CosmoTransitions: Cosmological Phase Transitions

CosmoTransitions analyzes early-Universe finite-temperature phase transitions with multiple scalar fields. The code enables analysis of the phase structure of an input theory, determines the amount of supercooling at each phase transition, and finds the bubble-wall profiles of the nucleated bubbles that drive the transitions.

[ascl:1504.009]
Self-lensing binary code with Markov chain

The self-lensing binary code with Markov chain code was used to analyze the self-lensing binary system KOI-3278. It includes the MCMC modeling and the key figures.

[ascl:1504.008]
MCSpearman: Monte Carlo error analyses of Spearman's rank test

Spearman’s rank correlation test is commonly used in astronomy to discern whether a set of two variables are correlated or not. Unlike most other quantities quoted in astronomical literature, the Spearman’s rank correlation coefficient is generally quoted with no attempt to estimate the errors on its value. This code implements a number of Monte Carlo based methods to estimate the uncertainty on the Spearman’s rank correlation coefficient.

[ascl:1504.007]
WebbPSF: James Webb Space Telescope PSF Simulation Tool

Perrin, Marshall D.; Long, Joseph; Sivaramakrishnan, Anand; Lajoie, Charles-Phillipe; Elliot, Erin; Pueyo, Laurent; Albert, Loic

WebbPSF provides a PSF simulation tool in a flexible and easy-to-use software package implemented in Python. Functionality includes support for spectroscopic modes of JWST NIRISS, MIRI, and NIRSpec, including modeling of slit losses and diffractive line spread functions.

[ascl:1504.006]
drive-casa: Python interface for CASA scripting

drive-casa provides a Python interface for scripting of CASA (ascl:1107.013) subroutines from a separate Python process, allowing for utilization alongside other Python packages which may not easily be installed into the CASA environment. This is particularly useful for embedding use of CASA subroutines within a larger pipeline. drive-casa runs plain-text casapy scripts directly; alternatively, the package includes a set of convenience routines which try to adhere to a consistent style and make it easy to chain together successive CASA reduction commands to generate a command-script programmatically.

[ascl:1504.005]
chimenea: Multi-epoch radio-synthesis data imaging

Chimenea implements an heuristic algorithm for automated imaging of multi-epoch radio-synthesis data. It generates a deep image via an iterative Clean subroutine performed on the concatenated visibility set and locates steady sources in the field of view. The code then uses this information to apply constrained and then unconstrained (*i.e.*, masked/open-box) Cleans to the single-epoch observations. This obtains better results than if the single-epoch data had been processed independently without prior knowledge of the sky-model. The chimenea pipeline is built upon CASA (ascl:1107.013) subroutines, interacting with the CASA environment via the drive-casa (ascl:1504.006) interface layer.

[ascl:1504.004]
HOTPANTS: High Order Transform of PSF ANd Template Subtraction

HOTPANTS (High Order Transform of PSF ANd Template Subtraction) implements the Alard 1999 algorithm for image subtraction. It photometrically aligns one input image with another after they have been astrometrically aligned.

[ascl:1504.003]
EsoRex: ESO Recipe Execution Tool

EsoRex (ESO Recipe Execution Tool) lists, configures, and executes Common Pipeline Library (CPL) (ascl:1402.010) recipes from the command line. Its features include automatically generating configuration files, recursive recipe-path searching, command line and configuration file parameters, and recipe product naming control, among many others.

[ascl:1504.002]
SPA: Solar Position Algorithm

The Solar Position Algorithm (SPA) calculates the solar zenith and azimuth angles in the period from the year -2000 to 6000, with uncertainties of +/- 0.0003 degrees based on the date, time, and location on Earth. SPA is implemented in C; in addition to being available for download, an online calculator using this code is available at http://www.nrel.gov/midc/solpos/spa.html.

[ascl:1504.001]
UPMASK: Unsupervised Photometric Membership Assignment in Stellar Clusters

UPMASK, written in R, performs membership assignment in stellar clusters. It uses photometry and spatial positions, but can take into account other types of data. UPMASK takes into account arbitrary error models; the code is unsupervised, data-driven, physical-model-free and relies on as few assumptions as possible. The approach followed for membership assessment is based on an iterative process, principal component analysis, a clustering algorithm and a kernel density estimation.

[ascl:1503.011]
VESPA: False positive probabilities calculator

Validation of Exoplanet Signals using a Probabilistic Algorithm (VESPA) calculates false positive probabilities and statistically validates transiting exoplanets. Written in Python, it uses isochrones [ascl:1503.010] and the package simpledist.

[ascl:1503.010]
isochrones: Stellar model grid package

Isochrones, written in Python, simplifies common tasks often done with stellar model grids, such as simulating synthetic stellar populations, plotting evolution tracks or isochrones, or estimating the physical properties of a star given photometric and/or spectroscopic observations.

[ascl:1503.009]
GSD: Global Section Datafile access library

Tilanus, Remo; Meyerdierks, Horst; Jenness, Tim; Fairclough, Jon; Padman, Rachael; Redman, Russell; Cockayne, Steve

The GSD library reads data written in the James Clerk Maxwell Telescope GSD format. This format uses the General Single-Dish Data model and was used at the JCMT until 2005. The library provides an API to open GSD files and read their contents. The content of the data files is self-describing and the library can return the type and name of any component. The library is used by SPECX (ascl:1310.008), JCMTDR (ascl:1406.019) and COADD (ascl:1411.020). The SMURF (ascl:1310.007) package can convert GSD heterodyne data files to ACSIS format using this library.

[ascl:1503.008]
pYSOVAR: Lightcurves analysis

The pYSOVAR code calculates properties for a stack of lightcurves, including simple descriptive statistics (mean, max, min, ...), timing (e.g. Lomb-Scargle periodograms), variability indixes (e.g. Stetson), and color properties (e.g. slope in the color-magnitude diagram). The code is written in python and is closely integrated with astropy tables. Initially, pYSOVAR was written specifically for the analysis of two clusters in the YSOVAR project, using the (not publicly released) YSOVAR database as an input. Additional functionality has been added and the code has become more general; it is now useful for other clusters in the YSOVAR dataset or for other projects that have similar data (lightcurves in one or more bands with a few hundred points for a few thousand objects), though may not work out-of-the-box for different datasets.

[ascl:1503.007]
UniPOPS: Unified data reduction suite

Maddalena, Ronald J.; Garwood, Robert W.; Salter, Christopher J.; Stobie, Elizabeth B; Cram, Thomas R.; Morgan, Lorrie; Vance, Bob; Hudson, Jerome

UniPOPS, a suite of programs and utilities developed at the National Radio Astronomy Observatory (NRAO), reduced data from the observatory's single-dish telescopes: the Tucson 12-m, the Green Bank 140-ft, and archived data from the Green Bank 300-ft. The primary reduction programs, 'line' (for spectral-line reduction) and 'condar' (for continuum reduction), used the People-Oriented Parsing Service (POPS) as the command line interpreter. UniPOPS unified previous analysis packages and provided new capabilities; development of UniPOPS continued within the NRAO until 2004 when the 12-m was turned over to the Arizona Radio Observatory (ARO). The submitted code is version 3.5 from 2004, the last supported by the NRAO.

[ascl:1503.006]
AMADA: Analysis of Multidimensional Astronomical DAtasets

AMADA allows an iterative exploration and information retrieval of high-dimensional data sets. This is done by performing a hierarchical clustering analysis for different choices of correlation matrices and by doing a principal components analysis in the original data. Additionally, AMADA provides a set of modern visualization data-mining diagnostics. The user can switch between them using the different tabs.

[ascl:1503.005]
dust: Dust scattering and extinction in the X-ray

Written in Python, dust calculates X-ray dust scattering and extinction in the intergalactic and local interstellar media.

[ascl:1503.004]
HELIOS-K: Opacity Calculator for Radiative Transfer

HELIOS-K is an opacity calculator for exoplanetary atmospheres. It takes a line list as an input and computes the line shapes of an arbitrary number of spectral lines (~millions to billions). HELIOS-K is capable of computing 100,000 spectral lines in 1 second; it is written in CUDA, is optimized for graphics processing units (GPUs), and can be used with the HELIOS radiative transfer code (ascl:1807.009).

[ascl:1503.003]
TAME: Tool for Automatic Measurement of Equivalent-width

TAME measures the equivalent width (EWs) in high-resolution spectra. Written by IDL, TAME provides the EWs of spectral lines by profile fitting in an automatic or interactive mode and is reliable for measuring EWs in a spectrum with a spectral resolution of R ≳ 20000. It offers an interactive mode for more flexible measurement of the EW and a fully automatic mode that can simultaneously measure the EWs for a large set of lines.

[ascl:1503.002]
Galax2d: 2D isothermal Euler equations solver

Galax2d computes the 2D stationary solution of the isothermal Euler equations of gas dynamics in a rotating galaxy with a weak bar. The gravitational potential represents a weak bar and controls the flow. A damped Newton method solves the second-order upwind discretization of the equations for a steady-state solution, using a consistent linearization and a direct solver. The code can be applied as a tool for generating flow models if used on not too fine meshes, up to 256 by 256 cells for half a disk in polar coordinates.

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