[submitted]
amber_meta

amber_meta integrates a few routines to launch AMBER (the “Apertif Monitor for Bursts Encountered in Real-time”, https://github.com/AA-ALERT/AMBER) in a systematic manner. To avoid typing a string in the command line manually with all parameters required to launch AMBER, amber_meta generates the command from configuration files, and can directly launch AMBER instances.

[ascl:2001.001]
Min-CaLM: Mineral compositional analysis on debris disk spectra

Min-CaLM performs automated mineral compositional analysis on debris disk spectra. The user inputs the debris disk spectrum, and using Min-CaLM's built-in mineralogical library, Min-CaLM calculates the relative mineral abundances within the disk. To do this calculation, Min-CaLM converts the debris disk spectrum and the mineralogical library spectra into a system of linear equations, which it then solves using non-negative least square minimization. This code comes with a GitHub tutorial on how to use the Min-CaLM package.

[ascl:2001.002]
TRANSPHERE: 1-D spherical continuum radiative transfer

TRANSPHERE is a simple dust continuum radiative transfer code for spherically symmetric circumstellar envelopes. It handles absorption and re-emission and computes the dust temperature self-consistently; it does not, however, deal with scattering. TRANSPHERE uses a variable eddington factor method for the radiative transfer. The RADMD code (ascl:1108.016) is more versatile, but for a spherically symmetric problem for which scattering is of much concern, it may be easier to use a simple code such as TRANSPHERE.

Please note that this code has not been updated since 2006.

[ascl:2001.003]
sf3dmodels: Star-forming regions 3D modelling package

sf3dmodels models star-forming regions; it brings together analytical models in order to compute their physical properties in a 3-dimensional grid. The package can couple different models in a single grid to recreate complex star forming systems such as those being revealed by current instruments. The output data can be read with LIME (ascl:1107.012) or RADMC-3D (ascl:1108.016) to carry out radiative transfer calculations of the modeled region.

[ascl:2001.004]
FragMent: Fragmentation techniques for studying filaments

FragMent studies fragmentation in filaments by collating a number of different techniques, including nearest neighbour separations, minimum spanning tree, two-point correlation function, and Fourier power spectrum. It also performs model selection using a frequentist and Bayesian approach to find the best descriptor of a filament's fragmentation. While the code was designed to investigate filament fragmentation, the functions are general and may be used for any set of 2D points to study more general cases of fragmentation.

[ascl:2001.005]
FAKEOBS: Model visibilities generator

The CASA (1107.013) task FAKEOBS generates model visibilities from already-existing measurement sets. This task can be used to substitute all the visibilities of the target with simulations computed from any model image. The measurement can either be with real or simulated data, the target can have been observed in mosaic mode, and there can be several sources (*e.g.*, bandpass calibrator, flux/phase calibrator, and target).

[ascl:2001.006]
Protostellar Evolution: Stellar evolution simulator

Protostellar Evolution simulates the evolution of stellar stellar radius and luminosity from the bound core stage through to the core hydrogen ignition as a zero-age main-sequence (ZAMS) star and beyond. Written in Fortran 90, the code is implemented as a module of the FLASH astrophysical fluid dynamics code (ascl:1010.082).

[ascl:2001.007]
BTS: Behind The Spectrum

Clarke, S. D.; Whitworth, A. P.; Spowage, R. L.; Duarte-Cabral, A.; Suri, S. T.; Jaffa, S. E.; Walch, S.; Clark, P. C.

Behind The Spectrum (BTS) is a fully-automated multiple-component fitter for optically-thin spectra. Written as a python module, the routine uses the first, second and third derivatives to determine thenumber of components in the spectrum. A least-squared fitting routine then determines the best fit with that number of components, checking for over-fitting and over-lapping velocity centroids.

[ascl:2001.008]
DebrisDiskFM: Debris Disk Forward Modeling

DebrisDiskFM provides forward modeling for circumstellar debris disks in scattered light using the MCFOST disk modeling software to generate disk model images using given input parameters and emcee (ascl:1303.002) to obtain the posterior distributions for these parameters.

[ascl:2001.009]
ORCS: Analysis engine for SITELLE spectral cubes

ORCS (Outils de Réduction de Cubes Spectraux) is an analysis engine for SITELLE spectral cubes. The software extracts integrated spectra, fits the sinc emission lines, and recalibrates data in wavelength, astrometry and flux. ORCS offers a choice between a Bayesian or a classical fitting algorithm , and also provides automatic source detection and radial velocity correction.

[ascl:2001.010]
CosMOPED: Compressed Planck likelihood

CosMOPED (Cosmological MOPED) uses the MOPED (Multiple/Massively Optimised Parameter Estimation and Data compression) compression scheme to compress the Planck power spectrum. This convenient and lightweight compressed likelihood code is implemented in Python. To compute the likelihood for the LambdaCDM model using CosMOPED, one needs only six compression vectors, one for each parameter, and six numbers from compressing the Planck data using the six compression vectors. Using these, the likelihood of a theory power spectrum given the Planck data is the product of six one-dimensional Gaussians. Extended cosmological models require computing extra compression vectors.

[ascl:2001.011]
ExoTETHyS: Exoplanetary transits and eclipsing binaries modeler

Morello, Giuseppe; Claret, Antonio; Martin-Lagarde, Marine; Cossou, Christophe; Tsiaras, Angelos; Lagage, Pierre-Olivier

ExoTETHyS models exoplanetary transits, eclipsing binaries, and related phenomena. The package calculates stellar limb-darkening coefficients down to <10 parts per million (ppm) and generates an exact transit light-curve based on the entire stellar intensity profile rather than limb-darkening coefficients.

[ascl:2001.012]
MCMCI: Markov Chain Monte Carlo + Isochrones method for characterizing exoplanetary systems

MCMCI (Markov chain Monte Carlo + isochrones) characterizes a whole exoplanetary system directly by modeling the star and its planets simultaneously. The code, written in Fortran, uses light curves and basic stellar parameters with a transit analysis algorithm that interacts with stellar evolutionary models, thus using both model-dependent and empirical age indicators to characterize the system.

[ascl:2001.013]
RPPPS: Re-analyzing Pipeline for Parkes Pulsar Survey

RPPPS (Re-analysing Pipeline for Parkes Pulsar Survey) uses Linux shell scripts, C language, and python code and two parallel strategies to reorganize the PRESTO (ascl:1107.017) pulsar search pipeline to run multiple processes in parallel, thus accelerating the search for pulsars. Though originally designed for reprocessing PMPS data, the code has also been successfully used with FAST (Five-hundred-meter Aperture Spherical radio Telescope) drift scan data. The pipeline is only CPU-based and can be easily and quickly deployed in computing nodes for testing purposes or data processes.

[ascl:2001.014]
Peasoup: C++/CUDA GPU pulsar searching library

The NVIDIA GPU-based pipeline code peasoup provides a one-step pulsar search, including searching for pulsars with up to moderate accelerations, with only one command. Its features include dedispersion, dereddening in the Fourier domain, resampling, peak detection, and optional time series folding. peasoup's output is the candidate list.

[ascl:2001.015]
gnm: The MCMC Jagger

gnm is an implementation of the affine-invariant sampler for Markov chain Monte Carlo (MCMC) that uses the Gauss-Newton-Metropolis (GNM) Algorithm. The GNM algorithm is specialized in sampling highly non-linear posterior probability distribution functions of the form exp(-||f(x)||^2/2). The code includes dynamic hyper-parameter optimization to increase performance of the sampling; other features include the Jacobian tester and an error bars creator.

[submitted]
StarburstPy: Python Wrapper for Starburst99

StarburstPy is a python wrapper for Starburst99 (ascl:1104.003). The code contains methods for setting all inputs, running Starburst99, and reading output data into python dictionaries.

[submitted]
pycf3 - Cosmicflows-3 Distance-Velocity Calculator client for Python

The project is a simple Python client for Cosmicflows-3 Distance-Velocity Calculator at distances less than 400 Mpc (http://edd.ifa.hawaii.edu/CF3calculator/)

Compute expectation distances or velocities based on smoothed velocity field from the Wiener filter model of https://ui.adsabs.harvard.edu/abs/2019MNRAS.488.5438G/abstract.

[submitted]
MERA: Analysis Tool for Astrophysical Simulation Data in the Julia Language

MERA works with large 3D AMR/uniform-grid and N-body particle data sets from astrophysical simulations such as those produced by the hydrodynamic code RAMSES (ascl:1011.007) and is written entirely in the Julia language. The package provides essential functions for efficient and memory lightweight data loading and analysis. The core of MERA is a database framework.

[submitted]
Determination of Length of (Earth) Day [LOD] in the past geologic epochs

The protocol describes the algorithm of arriving at LOD in a given past geological Epoch. First the lunar orbital radius of the given geologic epoch has to be determined. For this the velocity of recession of Moon for the accelerated phase has to be determined. The spatial integral of the reciprocal of Velocity of recession gives the the transit time of Moon from desired orbit to the present orbit.Through several iterations the transit time is made to converge on the geologic epoch. Once we determine the desired orbital radius it has to be substituted in the LOD expression to determine the LOD in the given geologic epoch.

[ascl:2002.001]
SDAR: Slow-Down Algorithmic Regularization code for solving few-body problems

SDAR (Slow-Down Algorithmic Regularization) simulates the long-term evolution of few-body systems such as binaries and triples. The algorithm used provides a few orders of magnitude faster performance than the classical N-body method. The secular evolution of hierarchical systems, *e.g.* Kozai-Lidov oscillation, can be well reproduced. The code is written in the C++ language and can be used either as a stand-alone tool or a library to be plugged in other N-body codes. The high precision of the floating point to 62 digits is also supported.

[ascl:2002.002]
RASCAS: Resonant line transfer in AMR simulations

Michel-Dansac, Leo; Blaizot, Jeremy; Garel, Thibault; Verhamme, Anne; Kimm, Taysun; Trebitsch, Maxime

The massively parallel code RASCAS (RAdiative SCattering in Astrophysical Simulations) performs radiative transfer on an adaptive mesh with an octree structure using the Monte Carlo technique. The code features full MPI parallelization, domain decomposition, adaptive load-balancing, and a standard peeling algorithm to construct mock observations. The radiative transport of resonant line photons through different mixes of species (e.g. HI, SiII, MgII, FeII), including their interaction with dust, is implemented in a modular fashion to allow new transitions to be easily added to the code. RASCAS may also be used to propagate photons at any wavelength (e.g. stellar continuum or fluorescent lines), and has been designed to be easily customizable and to process simulations of arbitrarily large sizes on large supercomputers.

[ascl:2002.003]
ORIGIN: detectiOn and extRactIon of Galaxy emIssion liNes

ORIGIN performs blind detection of faint emitters in MUSE datacubes. The algorithm is tuned to detect faint spatial-spectral emission signatures while allowing for a stable false detection rate over the data cube, and providing in the same time an automated and reliable estimation of the purity. ORIGIN implements a nuisance removal part based on a continuum subtraction combining a Discrete Cosine Transform and an iterative Principal Component Analysis and a detection part based on the local maxima of Generalized Likelihood Ratio test statistics obtained for a set of spatial-spectral profiles of emission line emitters. In addition, it performs a purity estimation in which the proportion of true emission lines is estimated from the data itself: the distribution of the local maxima in the noise only configuration is estimated from that of the local minima.

[ascl:2002.004]
triceratops: Candidate exoplanet rating tool

triceratops (Tool for Rating Interesting Candidate Exoplanets and Reliability Analysis of Transits Originating from Proximate Stars) validates planet candidates from the Transiting Exoplanet Survey Satellite (TESS). The code calculates the probabilities of a wide range of transit-producing scenarios using the primary transit of the planet candidate and preexisting knowledge of its host and nearby stars. It then uses the known properties of these stars to calculate star-specific priors for each scenario with estimates of stellar multiplicity and planet occurrence rates.

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